WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00226659 Gene Name  Bm6398
Sequence Name  ? Bm6398 Organism  Brugia malayi
Automated Description  Is affected by 20-hydroxyecdysone based on proteomic studies. Is predicted to encode a protein with the following domains: FAD/NAD(P)-binding domain superfamily; FAD dependent oxidoreductase; GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1; FAD dependent oxidoreductase central domain; Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein/YgfZ, C-terminal; Glycine cleavage T-protein C-terminal barrel domain; FAD dependent oxidoreductase, central domain; Glycine cleavage T-protein, C-terminal barrel domain; and Aminomethyltransferase, folate-binding domain. Is an ortholog of C. elegans Y37E3.17. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm6398b.1 Bm6398b.1   [unknown]
Transcript:Bm6398a.1 Bm6398a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm6398a Bm6398a   [unknown]
CDS:Bm6398b Bm6398b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F30
  Proteins that showed significantly increased expression in parasites exposed to 20-hydroxyecdysone. An empirical filter of proteins with more than two peptides identified, a P value <0.05 and a greater than two-fold change of differential expression, was applied to the data. The Bonferroni correction was applied to correct the P value for the proteins analyzed. WBPaper00049261:20-hydroxyecdysone_upregulated_protein

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term