WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00122394 Gene Name  CJA03190
Sequence Name  ? CJA03190 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; Immunoglobulin subtype; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Fibronectin type III domain; Immunoglobulin-like domain superfamily; and Fibronectin type III superfamily. Is an ortholog of C. elegans ptp-3. In C. elegans, ptp-3 is involved in several processes, including embryonic morphogenesis; nervous system development; and neuroblast migration. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA03190b.1 CJA03190b.1   [unknown]
Transcript:CJA03190a.1 CJA03190a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA03190a CJA03190a   [unknown]
CDS:CJA03190b CJA03190b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA03190, TCGATGGAAAAGTCCAGAACAGAAGAAATTGAACGGCGTCTTGACGGCTTATCGGATTAG, WBGene00122394   Expr1074482 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term