WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00060023 Gene Name  Cre-cle-1
Sequence Name  ? CRE29745 Organism  Caenorhabditis remanei
Automated Description  Is predicted to encode a protein with the following domains: C-type lectin fold; Fibronectin type III superfamily; Fibronectin type III; Collagen triple helix repeat (20 copies); Immunoglobulin-like fold; Collagenase NC10/endostatin; Collagen triple helix repeat; C-type lectin-like/link domain superfamily; Fibronectin type III domain; Concanavalin A-like lectin/glucanase domain superfamily; and Collagenase NC10 and Endostatin. Is an ortholog of C. elegans cle-1. In C. elegans, cle-1 is involved in several processes, including cholinergic synaptic transmission; generation of neurons; and inductive cell migration. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis remanei 31234

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CRE29745.1 CRE29745.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CRE29745 CRE29745   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cre-cle-1, GTCCAAGTACCACGGCGATCGAATCCTCCGTTTGAACCGAATCACCTCCGACTTCAAAAT, WBGene00060023   Expr1109407 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term