WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00135790 Gene Name  CJA16586
Sequence Name  ? CJA16586 Organism  Caenorhabditis japonica
Automated Description  Is predicted to encode a protein with the following domains: Aspartic peptidase domain superfamily; gag-polyprotein putative aspartyl protease; RNase H-like domain found in reverse transcriptase; Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase domain; Reverse transcriptase/Diguanylate cyclase domain; DNA/RNA polymerase superfamily; and Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA16586a.1 CJA16586a.1   [unknown]
Transcript:CJA16586b.1 CJA16586b.1   [unknown]
Transcript:CJA16586c.1 CJA16586c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA16586c CJA16586c   [unknown]
CDS:CJA16586b CJA16586b   [unknown]
CDS:CJA16586a CJA16586a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA16586, TGCCAACTGCCGAAGACATCTTCACAACGCTCAATGGTGCCAAATACTTCACTCAAATCG, WBGene00135790   Expr1083953 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term