WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00229736 Gene Name  Bm9475
Sequence Name  ? Bm9475 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: DNA/RNA non-specific endonuclease superfamily; Alkaline-phosphatase-like, core domain superfamily; Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; and Type I phosphodiesterase / nucleotide pyrophosphatase. Is an ortholog of O. volvulus OVOC3116. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm9475c.1 Bm9475c.1   [unknown]
Transcript:Bm9475b.1 Bm9475b.1   [unknown]
Transcript:Bm9475a.1 Bm9475a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm9475a Bm9475a   [unknown]
CDS:Bm9475c Bm9475c   [unknown]
CDS:Bm9475b Bm9475b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly lower expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Downregulated
  Transcripts that showed significantly higher expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Upregulated
  Proteins secreted by B.malayi at L3 larva stage, according to LC-MS-MS. N.A. WBPaper00050454:Secretome_protein
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated
  Transcripts that showed significantly lower expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Downregulated
  Transcripts that showed significantly decreased expression at L3 day 6 animals comparing to L3 Day 9 worms. Differential gene expression analysis was performed using both DESeq and EdgeR, and the overlapping genes with FDR<0.01 were retained. WBPaper00059852:B.malayi_L3Day6_downregulated_vs_L3Day9

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term