WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Strain :

WormBase ID  WBStrain00054880 CGC Received  2023-03-23
Genotype  vit-2(ok3211) vit-1(hq532) X. Laboratory  CGC
Mutagen  CRISPR_Cas9 Name  MQD2884
Outcrossed  x0 Remark  hq532 is a CRISPR-engineered knockout of vit-1 in vit-2(ok3211) background removing 8 bp from the third exon of vit-1: WT sequence AAAGCATTGAGAAGGAGTCCACAACTGTTGTCCGCGGACGCCGTATCCAAACCGGAATCACG mutated to AAAGCATTGAGAAGGAGTCCACAAC--------GCGGACGCCGTATCCAAACCGGAATCACG. For genotyping, the following primers will produce ~800 bp DNA fragment that can be sequenced. Forward primer: TACCAACGTGTTGCTATCGTTTGCTC. Reverse primer: TTGCTCGAAGAGTGGGGTGAACATTCTC. Strain does not express vit-1 or vit-2. Reference: Zhai C, et al. bioRxiv 2022.06.27.497668; doi: https:
Species  Caenorhabditis elegans

2 Alleles

Public Name
ok3211
hq532

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006925 vit-1 K09F5.2 Caenorhabditis elegans
WBGene00006926 vit-2 C42D8.2 Caenorhabditis elegans