WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222990 Gene Name  Bma-odr-8
Sequence Name  ? Bm2729 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: Papain-like cysteine peptidase superfamily; Peptidase family C78; and Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2. Is an ortholog of C. elegans odr-8. In C. elegans, odr-8 is involved in several processes, including positive regulation of chemotaxis; protein localization to non-motile cilium; and response to ethanol. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm2729a.1 Bm2729a.1   [unknown]
Transcript:Bm2729b.1 Bm2729b.1   [unknown]
Transcript:Bm2729c.1 Bm2729c.1   [unknown]
Transcript:Bm2729d.1 Bm2729d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm2729d Bm2729d   [unknown]
CDS:Bm2729c Bm2729c   [unknown]
CDS:Bm2729b Bm2729b   [unknown]
CDS:Bm2729a Bm2729a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly higher expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Upregulated
  Transcripts that showed significantly increased expression in female B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F120_vs_F30
  Transcripts that showed significantly increased expression in female B. malayi 30 days after infecting gerbils, comparing to L4 female B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_F30_vs_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term