WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219240 Gene Name  CBG29119
Sequence Name  ? CBG29119 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Actin; ATPase, nucleotide binding domain; and Actin family. Is an ortholog of C. elegans act-1 and act-3. In C. elegans, act-1 is involved in cortical actin cytoskeleton organization; embryo development; and mitotic cytokinesis. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG29119.1 CBG29119.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG29119 CBG29119   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: Pseudomonas aeruginosa PAO1 Proteins that showed significantly decreased expression after 24 hours of infection by Pseudomonas aeruginosa PAO1 strain, accroding to 2D-DIGE and mass spectrometry. In the MASCOT search the proteins were searched against a mass tolerance of +/- 50and 100 ppm with one missed cleavage per peptide were allowed in all searches. Proteins with consistent hit against different mass tolerance, different databases and significant score >50 only were accepted. WBPaper00049595:P.aeruginosa_24h_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term