WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00222681 Gene Name  Bma-che-11
Sequence Name  ? Bm2420 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: WD40-repeat-containing domain superfamily; Tetratricopeptide-like helical domain superfamily; and WD40/YVTN repeat-like-containing domain superfamily. Is an ortholog of C. elegans che-11. In C. elegans, che-11 is involved in several processes, including dauer entry; positive regulation of intracellular transport; and response to stress. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm2420b.1 Bm2420b.1   [unknown]
Transcript:Bm2420c.1 Bm2420c.1   [unknown]
Transcript:Bm2420a.1 Bm2420a.1   [unknown]
Transcript:Bm2420d.1 Bm2420d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm2420a Bm2420a   [unknown]
CDS:Bm2420b Bm2420b   [unknown]
CDS:Bm2420c Bm2420c   [unknown]
CDS:Bm2420d Bm2420d   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly higher expression in L4 larva comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Micro_Upregulated
  Transcripts that showed significantly higher expression in adult comparing to in microfilariae. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:Adult_vs_Micro_Upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term