WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? RGD:2324431 Gene Name  Prdm16
Organism  Rattus norvegicus Automated Description  Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; histone H3K9 methyltransferase activity; and transcription coactivator activity. Predicted to be involved in several processes, including negative regulation of granulocyte differentiation; positive regulation of cold-induced thermogenesis; and regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including negative regulation of transforming growth factor beta receptor signaling pathway; positive regulation of brown fat cell differentiation; and regulation of DNA-templated transcription. Predicted to be located in aggresome; cytosol; and nucleoplasm. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1LL. Orthologous to human PRDM16 (PR/SET domain 16); PARTICIPATES IN histone modification pathway; INTERACTS WITH (S)-nicotine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Biotype  SO:0001217 Genetic Position 
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1 Organism

Name Taxon Id
Rattus norvegicus 10116

0 Synonyms

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
Panther orthologue and paralogue predictions  

0 Downstream Intergenic Region

0 Expression Clusters

0 Expression Patterns

0 GO Annotation

1 Homologues

Type
orthologue

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term