WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024051 Gene Name  Cbr-eff-1
Sequence Name  ? CBG00700 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Type I membrane glycoproteins cell-cell fusogen; Cell-cell fusogen EFF/AFF; and Cell-cell fusogen EFF/AFF, domain 3. Is an ortholog of C. elegans eff-1. In C. elegans, eff-1 is involved in several processes, including anatomical structure morphogenesis; egg-laying behavior; and nematode pharyngeal muscle development. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00700b.1 CBG00700b.1   [unknown]
Transcript:CBG00700a.1 CBG00700a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00700b CBG00700b   [unknown]
CDS:CBG00700a CBG00700a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-eff-1, GAAGTTGAATCCCAAAACCTTGTGTTCTTCCACAACGCTTCGCGCATCCGTGAATTCTCT, WBGene00024051   Expr1069063 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term