WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  pharyngeal epithelial cell, type 1. Name  e1
Primary Identifier  WBbt:0003718

3 Children

Definition Name Synonym Primary Identifier
Pharyngeal epithelial cells e1VR lineage name: ABaraaaaapa WBbt:0004555
Pharyngeal epithelial cells e1VL lineage name: ABaraaaaaaa WBbt:0004556
Pharyngeal epithelial cells e1D lineage name: ABaraaaapap WBbt:0003701

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Single-cell RNA-Seq cell group 37 expressed in: e1_e3 (pharyngeal epithelium). CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:37

6 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr11622 Expression of ceh-34::gfp transgene began during embryogenesis. CEH-34::GFP was localized to the nuclei of expressing cells. During embryonic morphogenesis and larval development and throughout adulthood, expression of the ceh-34::gfp transgene was seen predominantly in pharyngeal cells. The ceh-34::gfp transgene was expressed in all pharyngeal neurons (M4, I1, MI, I3, M3, NSM, MC, I2, I4, I5, I6, M1, M2, and M5), some pharyngeal muscle cells (pm1 and pm2) and pharyngeal epithelial cells (e1 and e3), and some body wall muscles around the anterior pharynx.  
This Expr_pattern is about CeTMIV, an isoform of tmy-1 transcription. To confirm the CeTMIV isoform expression pattern, corresponding tmy-1::gfp vectors were assayed. Similar GFP expressions induced in pharynx and intestines respectively. These results show that the CeTMIV isoform was expressed in the pharyngeal muscles and intestinal cells and establish that the primary promoter region was located within 853 bp upstream of the initial ATG. pretzel stage (author) = fully-elongated embryo (wjc).   Expr1679 The constructs pTMZIV4349 and pTMZIV1957 induced beta-galactosidase expressions in both the pharyngeal muscles and intestinal cells with similar intensities. Specifically, pharyngeal expressions were observed in all the eight muscle cells (m1-m8), one marginal cell (mc), one epithelial cell (e1) and the four cells of the pharyngo-intestinal valve (PIV). The 20 intestinal cells, some of which are binucleated and localized alongside the intestine, posterior of pharynx and anterior of anus were all stained with intense staining occurring at the most posterior end. Intestinal staining was limited only to intestinal cells, although there were slight variations in position of nuclei and staining intensity. Expression was also detected in embryos between gastrulation and the comma stage. At this stage of development, the exact nuclei are difficult to identify, but the positions and topology suggest pharynx and intestines. By the pretzel stage, identification of the different pharyngeal muscles showing expression becomes possible. A similar expression was also observed in the pharynx of males, although the intestinal staining was more restricted to the posterior region. No expression was induced by the further deletion construct pTMZIV1219. In all cases, the most uniform and intense expression patterns were observed between L1 and L2 worms, and were completed by L2. From L3 to adult, there was a reduction in expression intensity. Both pharyngeal and intestinal expressions were evident within six hours after staining.  
    Expr11526 CYP33E2 promoter-driven expression of GFP occurred exclusively in the pharynx and, not visible in each individual, in the pharyngeal-intestinal valve of the nematodes. This type of strong pharynx-restricted expression was observed throughout larval development and in adult nematodes. Expression was most prominent in the pharyngeal pro- and meta-corpus. Confocal imaging suggested marginal, muscle, and/or epithelial cells as the major expression sites of the pCYP33E2::GFP construct within the pharynx. Radially, only marginal cell types are continuously organized with three-fold symmetry around the pharyngeal lumen. Imaginary cross sections derived from confocal imaging series of the pro- and meta-corpus indicated that the GFP reporter was expressed in the three marginal mc1 cells, but not in the pm3 and pm4 muscle cells. A further labelling of the mc2 and mc3 marginal cells in the isthmus and terminal bulb becomes then visible. Expression was observed in finger-like fluorescent structures that represent the interlocking extensions that hold marginal cells to muscles. Furthermore, an expression of pCYP33E2::GFP also in the epithelial e1, e2, and e3 cells seems most likely. Fluorescence might also correspond to pm2 muscle cells.  
    Expr16520 Ppa-nas-6 was expressed in the pharyngeal muscles (pm2), arcade cells, epithelial cells (e1, e2, e3), marginal cells, (mc1, mc2, mc3), amphid neurones, and the pharyngeal-intestinal valve.  
late embryo(author) = fully-elongated embryo(curator). life_stage summary : L4/adult moult, vulval muscles life_stage summary : from late embryo , pharynx   Expr35 The second component is in the vm2 vulval muscles. The expression here is cytoplasmically localised, and covers only the period around the L4 to adult molt This gene has two distinct modes of expression. The earlier component is in a subset of cells of the pharynx, and is nuclear localised. Expression here is from late embryogenesis onwards, the subset consisting of the m4 muscles in the mid metacorpus,the m2 muscles and e1 and e2 epithelial cells of the procorpus, and the m8 muscle of the posterior terminal bulb.  
    Expr12198 Examination of the expression pattern of prdx-2 using a rescuing translational reporter (prdx-2prom::prdx-2::mCherry) revealed expression in a broad set of tissues: I2, I4, and intestine (as previously reported; Isermann et al., 2004), as well as muscle (pharyngeal muscle 1, vulval muscle, body wall muscle), epithelial cells (e1, e3), and many neurons in the head and tail.  

0 Life Stages

2 Parents

Definition Name Synonym Primary Identifier
cell that makes up epithelium in pharynx. pharyngeal epithelial cell pharyngeal epithelium WBbt:0005459
anterior section of pharyngeal corpus. procorpus   WBbt:0003713