WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Examination of male and hermaphrodite worms possessing the T03F1.5 pro::GFP construct demonstrated consistent GFP expression in two different anatomical regions. The first region identified was at the posterior end of the intestine of both hermaphrodite and male worms at all larval stages, and was consistent with the location of the sphincter muscle. The second region was at the anterior end of both hermaphrodite and male worms. Two cells anterior to the first pharyngeal bulb were linked to consistent GFP expression from the L1 to the adult stages. The two cell bodies located in the hypodermis on the dorsal and ventral side of the 'head' appeared to contain cellular processes which extended to the anterior end of the worm, in a fashion similar to dendrites. These processes bifurcated toward the anterior end, with the dorsal and ventral branches predicted to terminate in sensillae near the surface. Comparison of the observed expression patterns and the anatomical 'map' of C. elegans hermaphrodites indicated that no neurons are localised to this region, suggesting that the cells were not of this category. Instead, the GFP expression was consistent with two neuron-associated cells, namely the inner labial socket cell dorsal left (IlsoDL) and inner labial socket cell ventral left (IlsoVL). Transgenic worms which contained the pc::GFP (promoter and coding sequence) constructs showed similar expression profiles to those containing the promoter alone, but the GFP expression was significantly reduced. Primary Identifier  Expr2570

4 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
a saddle-shaped muscle cell that encircles the intestinal-rectal valve anal sphincter muscle lineage name: ABprpppppap WBbt:0005798
Inner labial socket ILsoDL lineage name: ABplaapaaap WBbt:0004521
Inner labial socket ILsoVL lineage name: ABalppapapp WBbt:0004503

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020187 gsp-4 T03F1.5 Caenorhabditis elegans

4 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024