WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10529
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31 Anatomy Terms

Definition Name Synonym Primary Identifier
Seam hypodermal cell H0R lineage name: ABarpapppa WBbt:0004777
Seam hypodermal cell, postembryonic blast cell H1R lineage name: ABarpapppp WBbt:0004765
Ventral cord motor neurons, innervate dorsal muscles DB3 lineage name: ABprpaaaapp WBbt:0004844
Ring interneuron, anteriorly projecting process that runs sublaterally SAADL lineage name: ABalppapapa WBbt:0005007
embryonic cell ABprpappp   WBbt:0005847
embryonic cell Dpap   WBbt:0006054
embryonic cell ABprpappa   WBbt:0006088
embryonic cell ABpraapa   WBbt:0006302
embryonic cell ABpraapp   WBbt:0006335
Embryonic cell of pedigree Daapa. Daapa lineage name: Daapa WBbt:0006381
Embryonic cell of pedigree Daapp. Daapp lineage name: Daapp WBbt:0006435
Embryonic cell of pedigree MSapappa. MSapappa DL4 WBbt:0006495
Embryonic cell of pedigree MSapappp. MSapappp DL1 WBbt:0006235
Embryonic cell of pedigree ABprpppppaa. ABprpppppaa lineage name: ABprpppppaa WBbt:0006138
embryonic cell MSpappa   WBbt:0006150
embryonic cell MSpappp   WBbt:0006260
embryonic cell MSaapaa   WBbt:0005902
embryonic cell MSaapap   WBbt:0006533
embryonic cell ABarapppap   WBbt:0005855
Embryonic cell of lineage ABarpaappa fuses into embryonic large hypodermal syncytium hyp7. ABarpaappa   WBbt:0005939
Pharyngeal muscle cell (nucleus) pm3DR lineage name: MSpaaaapa WBbt:0004325
Pharyngeal muscle cell (nucleus) pm4DR lineage name: MSpaaaapp WBbt:0004319
Pharyngo-intestinal valve vpi3D lineage name: MSaaappp WBbt:0004485
Postembryonic blast cell, excretory socket in embryo G1 lineage name: ABprpaaaapa WBbt:0004780
Embryonic cell of pedigree ABarpappap, precursor of hyp5 syncytium. ABarpappap   WBbt:0006085
embryonic cell MSaaappa   WBbt:0006102
Embryonic cell of pedigree ABarpaapaa, precursor of hyp6 syncytium. ABarpaapaa   WBbt:0006119
embryonic cell Capapp   WBbt:0006298
Embryonic cell of lineage ABarpaapap fuses into embryonic large hypodermal syncytium hyp7. ABarpaapap lineage name: ABarpaapap WBbt:0006375
embryonic cell MSaaapap   WBbt:0006485

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006853 unc-130 C47G2.2 Caenorhabditis elegans

409 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 142nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 142 min post first-cleavage Ce WBls:0000253
  The time period encompassing the 146th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 146 min post first-cleavage Ce WBls:0000257
  The time period encompassing the 145th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 145 min post first-cleavage Ce WBls:0000256
  The time period encompassing the 144th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 144 min post first-cleavage Ce WBls:0000255
  The time period encompassing the 143rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 143 min post first-cleavage Ce WBls:0000254
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317