WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10517
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56 Anatomy Terms

Definition Name Synonym Primary Identifier
The fourth (count from anterior-most) of twelve postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P4   WBbt:0006773
Seam hypodermal cell, postembryonic blast cell V3R lineage name: ABprappapa WBbt:0004896
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
embryonic cell Dpa   WBbt:0006045
embryonic cell Dap   WBbt:0006210
embryonic cell Dpp   WBbt:0006199
embryonic cell Daa   WBbt:0006289
embryonic cell ABplpappp   WBbt:0006390
Embryonic cell of pedigree MSppappa. MSppappa DR4 WBbt:0006318
Embryonic cell of pedigree MSppaaap. MSppaaap DR2 WBbt:0006342
Embryonic cell of pedigree MSppappp. MSppappp DR1 WBbt:0006450
Embryonic cell of pedigree MSppapap. MSppapap lineage name: MSppapap WBbt:0005848
embryonic cell Epra   WBbt:0006321
embryonic cell Eprp   WBbt:0006507
embryonic cell Capp   WBbt:0006098
embryonic cell Caap   WBbt:0005921
embryonic cell Cpap   WBbt:0006628
embryonic cell Cppp   WBbt:0006268
embryonic cell MSaaaapp   WBbt:0006595
embryonic cell MSaaapaa   WBbt:0006183
embryonic cell Capa   WBbt:0006444
embryonic cell Cppa   WBbt:0006168
embryonic cell MSaaapp   WBbt:0005892
embryonic cell MSaappa   WBbt:0006200
embryonic cell MSaappp   WBbt:0006714
embryonic cell Cpapp   WBbt:0005897
embryonic cell MSapaaa   WBbt:0005857
embryonic cell ABplpppppp   WBbt:0005960
embryonic cell MSaapaaa   WBbt:0005965
embryonic cell ABprppppp   WBbt:0005983

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003912 pal-1 C38D4.6 Caenorhabditis elegans

446 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 138th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 138 min post first-cleavage Ce WBls:0000249
  The time period encompassing the 137th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 137 min post first-cleavage Ce WBls:0000248
  The time period encompassing the 136th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 136 min post first-cleavage Ce WBls:0000247
  The time period encompassing the 135th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 135 min post first-cleavage Ce WBls:0000246
  The time period encompassing the 142nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 142 min post first-cleavage Ce WBls:0000253
  The time period encompassing the 141st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 141 min post first-cleavage Ce WBls:0000252
  The time period encompassing the 140th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 140 min post first-cleavage Ce WBls:0000251
  The time period encompassing the 139th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 139 min post first-cleavage Ce WBls:0000250
  The time period encompassing the 146th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 146 min post first-cleavage Ce WBls:0000257
  The time period encompassing the 145th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 145 min post first-cleavage Ce WBls:0000256
  The time period encompassing the 144th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 144 min post first-cleavage Ce WBls:0000255
  The time period encompassing the 143rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 143 min post first-cleavage Ce WBls:0000254
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276