WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10286
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31 Anatomy Terms

Definition Name Synonym Primary Identifier
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
embryonic cell ABalapapp   WBbt:0006132
embryonic cell ABalapapa   WBbt:0006314
embryonic cell ABpraapp   WBbt:0006335
embryonic cell Cpapp   WBbt:0005897
embryonic cell Cpapa   WBbt:0005962
embryonic cell ABprapaaa   WBbt:0005961
embryonic cell ABalapppp   WBbt:0005923
embryonic cell Caapa   WBbt:0006123
Cell of lineage ABplapapap, born in embryo, one of a group of postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P9/10L ABplapapap WBbt:0004412
Embryonic cell of lineage Caaaaa fuses into embryonic large hypodermal syncytium hyp7. Caaaaa   WBbt:0006076
Embryonic cell of pedigree ABarpaapaa, precursor of hyp6 syncytium. ABarpaapaa   WBbt:0006119
embryonic cell ABalappap   WBbt:0006164
embryonic cell ABprappap   WBbt:0006220
embryonic cell ABalapaaa   WBbt:0006227
embryonic cell ABarppapp   WBbt:0006240
embryonic cell Cpaaa   WBbt:0006212
embryonic cell ABalapaap   WBbt:0006217
embryonic cell ABprapapp   WBbt:0006290
embryonic cell Caaap   WBbt:0006267
embryonic cell ABalappaa   WBbt:0006380
embryonic cell ABprappaa   WBbt:0006350
Embryonic cell of lineage Caaaap fuses into embryonic large hypodermal syncytium hyp7. Caaaap   WBbt:0006319
embryonic cell ABalapppa   WBbt:0006476
embryonic cell ABprapapa   WBbt:0006510
embryonic cell Cpaap   WBbt:0006594
embryonic cell ABplapppp   WBbt:0006656
embryonic cell ABprapaap   WBbt:0006624
embryonic cell ABplapappp   WBbt:0006630
embryonic cell Caapp   WBbt:0006722

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001249 elt-1 W09C2.1 Caenorhabditis elegans

397 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319