WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10475
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9 Anatomy Terms

Definition Name Synonym Primary Identifier
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Embryonic cell of pedigree ABplaapppp, precursor of embryonic large hypodermal syncytium. ABplaapppp hyp7 WBbt:0006477
embryonic cell ABplpaaapp   WBbt:0005877
embryonic cell ABplappaap   WBbt:0005927
Cell of lineage ABplapapap, born in embryo, one of a group of postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P9/10L ABplapapap WBbt:0004412
Embryonic cell of pedigree ABplappppa, precursor of embryonic large hypodermal syncytium. ABplappppa lineage name: ABplappppa WBbt:0004671
embryonic cell ABplappaaa   WBbt:0006577
embryonic cell ABplapappp   WBbt:0006630
Embryonic cell of pedigree ABplaapppa, precursor of embryonic large hypodermal syncytium. ABplaapppa hyp7 WBbt:0006735

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000123 ama-1 F36A4.7 Caenorhabditis elegans

313 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 238th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 238 min post first-cleavage Ce WBls:0000349
  The time period encompassing the 242nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 242 min post first-cleavage Ce WBls:0000353
  The time period encompassing the 241st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 241 min post first-cleavage Ce WBls:0000352
  The time period encompassing the 240th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 240 min post first-cleavage Ce WBls:0000351
  The time period encompassing the 239th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 239 min post first-cleavage Ce WBls:0000350
  The time period encompassing the 246th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 246 min post first-cleavage Ce WBls:0000357
  The time period encompassing the 245th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 245 min post first-cleavage Ce WBls:0000356
  The time period encompassing the 244th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 244 min post first-cleavage Ce WBls:0000355
  The time period encompassing the 243rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 243 min post first-cleavage Ce WBls:0000354
  The time period encompassing the 250th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 250 min post first-cleavage Ce WBls:0000361
  The time period encompassing the 249th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 249 min post first-cleavage Ce WBls:0000360
  The time period encompassing the 248th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 248 min post first-cleavage Ce WBls:0000359
  The time period encompassing the 247th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 247 min post first-cleavage Ce WBls:0000358
  The time period encompassing the 254th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 254 min post first-cleavage Ce WBls:0000365
  The time period encompassing the 253rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 253 min post first-cleavage Ce WBls:0000364
  The time period encompassing the 252nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 252 min post first-cleavage Ce WBls:0000363
  The time period encompassing the 251st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 251 min post first-cleavage Ce WBls:0000362
  The time period encompassing the 258th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 258 min post first-cleavage Ce WBls:0000369
  The time period encompassing the 257th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 257 min post first-cleavage Ce WBls:0000368
  The time period encompassing the 256th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 256 min post first-cleavage Ce WBls:0000367
  The time period encompassing the 255th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 255 min post first-cleavage Ce WBls:0000366
  The time period encompassing the 262nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 262 min post first-cleavage Ce WBls:0000373
  The time period encompassing the 261st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 261 min post first-cleavage Ce WBls:0000372
  The time period encompassing the 260th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 260 min post first-cleavage Ce WBls:0000371
  The time period encompassing the 259th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 259 min post first-cleavage Ce WBls:0000370
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 263rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 263 min post first-cleavage Ce WBls:0000374
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381