WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10401
Paste the following link
Lists
This ExpressionPattern isn't in any lists. Upload a list.

13 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell Dpa   WBbt:0006045
embryonic cell Dap   WBbt:0006210
embryonic cell Dpp   WBbt:0006199
embryonic cell Daa   WBbt:0006289
embryonic cell Capp   WBbt:0006098
embryonic cell Caap   WBbt:0005921
embryonic cell Cpap   WBbt:0006628
embryonic cell Cppp   WBbt:0006268
embryonic cell Capa   WBbt:0006444
embryonic cell Cppa   WBbt:0006168
embryonic cell Cpaa   WBbt:0006516
embryonic cell Caaa   WBbt:0006563
embryonic cell ABplpppp   WBbt:0006647

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003912 pal-1 C38D4.6 Caenorhabditis elegans

57 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 170th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 170 min post first-cleavage Ce WBls:0000281
  The time period encompassing the 169th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 169 min post first-cleavage Ce WBls:0000280
  The time period encompassing the 168th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 168 min post first-cleavage Ce WBls:0000279
  The time period encompassing the 167th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 167 min post first-cleavage Ce WBls:0000278
  The time period encompassing the 174th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 174 min post first-cleavage Ce WBls:0000285