WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  A cell that is the E blast cell or is a lineal descendant of E. Name  E lineage cell
Primary Identifier  WBbt:0005208

19 Children

Definition Name Synonym Primary Identifier
embryonic cell Ep   WBbt:0006612
Embryonic founder cell E lineage name: P0.pap WBbt:0004804
embryonic cell Ea   WBbt:0006733
embryonic cell Eara   WBbt:0006161
embryonic cell Eala   WBbt:0006104
embryonic cell Epl   WBbt:0006000
embryonic cell Eplp   WBbt:0006496
embryonic cell Eal   WBbt:0006441
embryonic cell Ear   WBbt:0006370
embryonic cell Epra   WBbt:0006321
embryonic cell Epr   WBbt:0006547
embryonic cell Ealp   WBbt:0006546
embryonic cell Eprp   WBbt:0006507
embryonic cell Epla   WBbt:0006661
embryonic cell Earp   WBbt:0006646
embryonic cell Ealaa   WBbt:0005901
embryonic cell Eplpp   WBbt:0005854
embryonic cell Eprpp   WBbt:0006277
embryonic cell Earaa   WBbt:0005959

0 Expression Clusters

8 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr9973 Expression of gfp::sem-2 was first detectable in a subset of cells of the E and MS lineages in early gastrulating-stage embryos. The gfp::sem-2 expression persisted through embryonic and larval development in many cell types, including vulval, hypodermal and intestinal cells. gfp::sem-2 expression in the M lineage was first detectable at the 16-M stage in the SM mother cells, M.v(l/r)pa, and remained in both of their daughter cells, M.v(l/r)paa and M.v(l/r)pap. The presence of GFP::SEM-2 in M.v(l/r)pap was transient: GFP::SEM-2 was not detectable after M.v(l/r)pap differentiated into BWMs. However, GFP::SEM-2 persisted in the nuclei of the SM cells and all their descendants until the 8-SM stage, and became undetectable at the 16-SM stage. The GFP::SEM-2 protein was nuclear localized, consistent with its predicted role as a transcription factor.
    Expr13237 Stellaris smFISH probes targeting acdh-1, a short-chain acyl-CoA dehydrogenase, are shown in red (Cal Fluor 610). DAPI/blue marks embryonic nuclei, and PGL-1::GFP shows the corresponding location of P granules surrounding germ cell nuclei (arrowheads, green). During embryogenesis (A), acdh-1 expression begins in the E cells (arrow, red). Expression continues in the developing intestine, shown in red, throughout embryogenesis. Intestinal expression of acdh-1 persists through larval development in the L1 (B) and L2 (C) stages. These results extend previous findings from Arda et al., where acdh-1 was shown to be expressed in the adult intestine. scale = 20μm.  
Sequence feature object   Expr11831 Minimal end-1 and end-3 promoter::GFP fusions are sufficient to drive faithful E-specific expression of a reporter construct.  
    Expr9687 elt-7 is expressed throughout the E lineage.  
    Expr9688 nhr-57 is expressed throughout the E lineage and in other cells in the embryo.  
    Expr9690 pax-3 is expressed in specific subsets of E lineage cells and in other cells in the embryo. pax-3, is expressed in the posterior-most cells in the E lineage in wild type (Earp and Eprp).  
    Expr9691 ref-1 is expressed in specific subsets of E lineage cells and in other cells in the embryo. We found strong reporter expression in Eal and Epl cells but also weak reporter expression in both right daughters of Ex cells, with the level of expression correlated with the proximity of the cells to the MSapp cells. In wild type embryos Epl is further from the MSapp cell than Eal, and has a significantly lower level of ref-1 reporter expression (p-value = 6.2e-5). In addition Ear and Epr are yet more distant from MSapp and have still lower expression. Plotting ref-1 reporter expression versus distance from MSapp produces a high negative correlation.  
    Expr14797 We detected expression of kynu-1 in the embryo early in the E lineage and epidermis. This pattern was maintained in the L1 stage, but starting at L2 through adult- hood expression was only seen in the epidermis .  

0 Life Stages

1 Parents

Definition Name Synonym Primary Identifier
a cellular object that consists of subcellular components, expresses genes or functions. Cell Cell type WBbt:0004017