WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  cell that makes up the pharyngeal-intestinal valve. Name  pharyngeal-intestinal valve cell
Primary Identifier  WBbt:0007848

6 Children

Definition Name Synonym Primary Identifier
Pharyngo-intestinal valve vpi3V lineage name: MSaappap WBbt:0004484
Pharyngo-intestinal valve vpi3D lineage name: MSaaappp WBbt:0004485
Pharyngo-intestinal valve vpi2V lineage name: MSaappaa WBbt:0004486
Pharyngo-intestinal valve vpi2DR lineage name: MSpapappp WBbt:0004507
Pharyngo-intestinal valve vpi2DL lineage name: MSaapappp WBbt:0004508
Pharyngo-intestinal valve vpi1 lineage name: MSpaapapp WBbt:0004509

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging. Cufflinks FPKM value >=1. WBPaper00050990:arcade_intestinal-valve_expressed
  Transcripts uniquely expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging. Cufflinks FPKM value >=1. WBPaper00050990:arcade_intestinal-valve_enriched

4 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr14587 The integrated smoc-1 transcriptional reporter showed strong GFP expression. GFP was first detectable in several cells located in the anterior of bean stage embryos. In the developing larvae, GFP is expressed in cells of the pharynx, the intestine and the posterior hypodermis. Pharyngeal cells expressing smoc-1p::gfp include the epithelial cells e2, the marginal cells mc1 and mc2, the M4 neuron, and all six of the pharyngeal/intestinal valve cells. Cells of the posterior hypodermis expressing smoc-1p::gfp include hyp8, hyp9, hyp10, and hyp11. Expression in these tissues persisted from the L1 larval stage through adulthood. We noted that while all transgenic animals showed GFP expression in the pharynx and the posterior hypodermis, a small fraction of animals (~8%) did not exhibit GFP expression in all or some of the intestinal cells. We observed no GFP expression in any other tissues, including the nerve cord, body wall muscles (BWMs), or the M lineage.  
No detailed description on postembryonic expression pattern.   Expr1419 PHA-4 was observed in the nuclei of cells destined to form the digestive tract. At the 4E stage, weak expression is detected in 8 MS great-granddaughters and 10 ABa descendants (ABaraaaa/p, ABaraapa/p, ABarapaa/p, ABalpaaa/p, ABalpapa/p) that each produce pharyngeal cells, as well as nonpharyngeal cells. Faint expression was also detected in the four midgut precursors. Brighter staining is observed in 6 to 8 MS-derived and 16 to 18 ABa-derived cells after the next cell division (MSaaaa/p, MSaapa/p, MSpaaa/p, MSpapa/p). Soon thereafter, at the 8 to 12E stage, PHA-4 is first observed in the rectal precursors. Expression is maintained in all pharyngeal, midgut, and rectal cells throughout embryogenesis. nuclei
    Expr12914 EFN-4-GFP is detectable in intestinal cells prior to int5 intercalation. EFN-4-GFP is not detectable in intestinal cells at later stages, but is abundant in a subset of pharyngeal and valve cells anterior to the intestine. As expected for a secreted protein, EFN- 4-GFP accumulates at high levels in all visible extracellular spaces within the embryo.  
    Expr16176 As for IRK-1, IRK-2 is also expected by be targeted to the plasma membrane. The most notable cells labeled by irk-2 promoter expression were neurons of the anterior ganglia, the pharyngeal intestinal valve cell, and the posterior intestine, where again clear basolateral plasma membrane targeting can be observed. In adults, the spermatheca and the uterus were prominently labeled, and the IRK-2 fusion protein resided in the plasma membrane. It is interesting that irk gene expression was notably absent in muscle and hypodermal cells.  

0 Life Stages

2 Parents

Definition Name Synonym Primary Identifier
A group of six equivalent cells forms a tightly constructed `valve` that links the posterior bulb of the pharynx to the anterior four cells of the intestine. These six cells comprise a small epithelial channel with a cuticular lining in continuity with the pharyngeal cuticle and link the lumen of the pharynx to the large lumen of the anterior intestine. pharyngeal-intestinal valve cardia WBbt:0005767
cell of epithelium, the layer of cells that cover the external surface of an organism as well as forming an inner lining between the tissues and organs of that organism and the external environment. In C. elegans epithelial cells include epithelium of the alimentary tract, intestinal cells, hypodermis, interfacial cells and somatic gonad cells. epithelial cell epithelium WBbt:0003672