WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10351
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2 Anatomy Terms

Definition Name Synonym Primary Identifier
Embryonic cell of lineage Cpaaaa fuses into embryonic large hypodermal syncytium hyp7. Cpaaaa   WBbt:0006151
Embryonic cell of lineage Cpaaap fuses into embryonic large hypodermal syncytium hyp7. Cpaaap   WBbt:0006357

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003024 lin-39 C07H6.7 Caenorhabditis elegans

304 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 250th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 250 min post first-cleavage Ce WBls:0000361
  The time period encompassing the 249th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 249 min post first-cleavage Ce WBls:0000360
  The time period encompassing the 248th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 248 min post first-cleavage Ce WBls:0000359
  The time period encompassing the 247th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 247 min post first-cleavage Ce WBls:0000358
  The time period encompassing the 254th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 254 min post first-cleavage Ce WBls:0000365
  The time period encompassing the 253rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 253 min post first-cleavage Ce WBls:0000364
  The time period encompassing the 252nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 252 min post first-cleavage Ce WBls:0000363
  The time period encompassing the 251st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 251 min post first-cleavage Ce WBls:0000362
  The time period encompassing the 258th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 258 min post first-cleavage Ce WBls:0000369
  The time period encompassing the 257th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 257 min post first-cleavage Ce WBls:0000368
  The time period encompassing the 256th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 256 min post first-cleavage Ce WBls:0000367
  The time period encompassing the 255th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 255 min post first-cleavage Ce WBls:0000366
  The time period encompassing the 262nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 262 min post first-cleavage Ce WBls:0000373
  The time period encompassing the 261st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 261 min post first-cleavage Ce WBls:0000372
  The time period encompassing the 260th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 260 min post first-cleavage Ce WBls:0000371
  The time period encompassing the 259th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 259 min post first-cleavage Ce WBls:0000370
  The time period encompassing the 266th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 266 min post first-cleavage Ce WBls:0000377
  The time period encompassing the 265th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 265 min post first-cleavage Ce WBls:0000376
  The time period encompassing the 264th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 264 min post first-cleavage Ce WBls:0000375
  The time period encompassing the 263rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 263 min post first-cleavage Ce WBls:0000374
  The time period encompassing the 270th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 270 min post first-cleavage Ce WBls:0000381
  The time period encompassing the 269th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 269 min post first-cleavage Ce WBls:0000380
  The time period encompassing the 268th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 268 min post first-cleavage Ce WBls:0000379
  The time period encompassing the 267th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 267 min post first-cleavage Ce WBls:0000378
  The time period encompassing the 274th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 274 min post first-cleavage Ce WBls:0000385
  The time period encompassing the 273rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 273 min post first-cleavage Ce WBls:0000384
  The time period encompassing the 272nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 272 min post first-cleavage Ce WBls:0000383
  The time period encompassing the 271st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 271 min post first-cleavage Ce WBls:0000382
  The time period encompassing the 278th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 278 min post first-cleavage Ce WBls:0000389
  The time period encompassing the 277th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 277 min post first-cleavage Ce WBls:0000388