WormMine: ExpressionPattern Expr10352

• Pattern: Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/
• Primary Identifier: Expr10352

2 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
Embryonic cell of lineage Cpaaaa fuses into embryonic large hypodermal syncytium hyp7.	Cpaaaa		WBbt:0006151
Embryonic cell of lineage Cpaaap fuses into embryonic large hypodermal syncytium hyp7.	Cpaaap		WBbt:0006357

1 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00003024	lin-39	C07H6.7	Caenorhabditis elegans

219 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	The time period encompassing the 423rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		423 min post first-cleavage Ce	WBls:0000534
	The time period encompassing the 422nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		422 min post first-cleavage Ce	WBls:0000533
	The time period encompassing the 421st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		421 min post first-cleavage Ce	WBls:0000532
	The time period encompassing the 427th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		427 min post first-cleavage Ce	WBls:0000538
	The time period encompassing the 426th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		426 min post first-cleavage Ce	WBls:0000537
	The time period encompassing the 425th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		425 min post first-cleavage Ce	WBls:0000536
	The time period encompassing the 424th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		424 min post first-cleavage Ce	WBls:0000535
	The time period encompassing the 431st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		431 min post first-cleavage Ce	WBls:0000542
	The time period encompassing the 430th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		430 min post first-cleavage Ce	WBls:0000541
	The time period encompassing the 429th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		429 min post first-cleavage Ce	WBls:0000540
	The time period encompassing the 428th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		428 min post first-cleavage Ce	WBls:0000539
	The time period encompassing the 435th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		435 min post first-cleavage Ce	WBls:0000546
	The time period encompassing the 434th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		434 min post first-cleavage Ce	WBls:0000545
	The time period encompassing the 433rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		433 min post first-cleavage Ce	WBls:0000544
	The time period encompassing the 432nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		432 min post first-cleavage Ce	WBls:0000543
	The time period encompassing the 439th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		439 min post first-cleavage Ce	WBls:0000550
	The time period encompassing the 438th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		438 min post first-cleavage Ce	WBls:0000549
	The time period encompassing the 437th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		437 min post first-cleavage Ce	WBls:0000548
	The time period encompassing the 436th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		436 min post first-cleavage Ce	WBls:0000547
	The time period encompassing the 443rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		443 min post first-cleavage Ce	WBls:0000554
	The time period encompassing the 442nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		442 min post first-cleavage Ce	WBls:0000553
	The time period encompassing the 441st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		441 min post first-cleavage Ce	WBls:0000552
	The time period encompassing the 440th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		440 min post first-cleavage Ce	WBls:0000551
	The time period encompassing the 447th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		447 min post first-cleavage Ce	WBls:0000558
	The time period encompassing the 446th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		446 min post first-cleavage Ce	WBls:0000557
	The time period encompassing the 445th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		445 min post first-cleavage Ce	WBls:0000556
	The time period encompassing the 444th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		444 min post first-cleavage Ce	WBls:0000555
	The time period encompassing the 451st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		451 min post first-cleavage Ce	WBls:0000562
	The time period encompassing the 450th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		450 min post first-cleavage Ce	WBls:0000561
	The time period encompassing the 449th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		449 min post first-cleavage Ce	WBls:0000560