WormMine: ExpressionPattern Expr10364

• Pattern: Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/
• Primary Identifier: Expr10364

2 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
embryonic cell	ABarppapp		WBbt:0006240
embryonic cell	ABarppapa		WBbt:0006529

1 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00003289	mir-61	F55A11.9	Caenorhabditis elegans

14 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		218 min post first-cleavage Ce	WBls:0000329
	The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		217 min post first-cleavage Ce	WBls:0000328
	The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		222 min post first-cleavage Ce	WBls:0000333
	The time period encompassing the 221st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		221 min post first-cleavage Ce	WBls:0000332
	The time period encompassing the 220th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		220 min post first-cleavage Ce	WBls:0000331
	The time period encompassing the 219th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		219 min post first-cleavage Ce	WBls:0000330
	The time period encompassing the 226th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		226 min post first-cleavage Ce	WBls:0000337
	The time period encompassing the 225th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		225 min post first-cleavage Ce	WBls:0000336
	The time period encompassing the 224th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		224 min post first-cleavage Ce	WBls:0000335
	The time period encompassing the 223rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		223 min post first-cleavage Ce	WBls:0000334
	The time period encompassing the 230th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		230 min post first-cleavage Ce	WBls:0000341
	The time period encompassing the 229th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		229 min post first-cleavage Ce	WBls:0000340
	The time period encompassing the 228th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		228 min post first-cleavage Ce	WBls:0000339
	The time period encompassing the 227th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		227 min post first-cleavage Ce	WBls:0000338