WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expression of the smp-2::gfp transcriptional reporter is detected initially in twofold embryos, in one mononucleate pharyngeal muscle cell and in intestinal cells. In the L1 stage, GFP fluorescence is observed in one mononucleate pharyngeal muscle cell m6, in all intestinal cells, in the head epidermal cells, in a restricted number of body wall muscles, in inner labial sensory neurons, and tentatively in URAVL/R and URADL/R motorneurons. In L4 larvae and adults, GFP fluorescence is restricted to intestinal cells and pharyngeal muscle cell m6. During larval development of the male tail, GFP expression is observed only in the hook. In adult males, rays 8 and 9, and the tail bursa express smp-2::gfp. smp-2::gfp is not seen in hyp 9 or hyp 10. Primary Identifier  Expr1886

23 Anatomy Terms

Definition Name Synonym Primary Identifier
Longitudinal bands of muscle cells surrounding animal body, with one band running in each quadrant of the body, regulated contraction and relaxation of these muscles cause locomotion. body wall musculature body muscle WBbt:0005813
  pharyngeal cell   WBbt:0005460
neuron type, member of a set of 12 neurons of the inner labial sensilla. inner labial neuron IL neuron WBbt:0005117
Post-embryonic cell of pedigree TL.appaaapa, male sensory rays, neuron, darkly staining tip, open to outside. R8BL lineage name: TL.appaaapa WBbt:0003990
Male sensory rays, neuron, darkly staining tip, open to outside R8BR lineage name: TR.appaaapa WBbt:0003988
Post-embryonic cell of pedigree TL.appapapa, male sensory rays, neuron, darkly staining tip, open to outside. R9BL lineage name: TL.appapapa WBbt:0003968
Male sensory rays, neuron, darkly staining tip, open to outside R9BR lineage name: TR.appapapa WBbt:0003966
Post-embryonic cell of pedigree TL.appapapp, male sensory rays, structural cell. R9stL lineage name: TL.appapapp WBbt:0003964
Male sensory rays, structural cell R9stR lineage name: TR.appapapp WBbt:0003962
Post-embryonic cell of pedigree TL.appaaapp, male sensory rays, structural cell. R8stL lineage name: TL.appaaapp WBbt:0003986
Male sensory rays, structural cell R8stR lineage name: TR.appaaapp WBbt:0003972
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724
Post-embryonic cell of pedigree TL.appaaaaa, male sensory rays, neuron, striated rootlet. R8AL lineage name: TL.appaaaaa WBbt:0003994
Male sensory rays, neuron, striated rootlet R8AR lineage name: TR.appaaaaa WBbt:0003992
Male sensory rays, neuron, striated rootlet R9AL lineage name: TL.appapaaa WBbt:0003971
Male sensory rays, neuron, striated rootlet R9AR lineage name: TR.appapaaa WBbt:0003970
Ring motor neuron URAVR lineage name: ABprpaaapaa WBbt:0004934
Ring motor neuron URADL lineage name: ABplaaaaaaa WBbt:0004940
Ring motor neuron URADR lineage name: ABarpapaaaa WBbt:0004936
Ring motor neuron URAVL lineage name: ABplpaaapaa WBbt:0004935
any of 20 large epithelial cells which form a tube and are mostly situated as bilaterally symmetric pairs around the tubular lumen. Each of these cell pairs forms an intestinal ring ( II-IX int rings). The most anterior intestinal ring (int ring I), however, is made of four cells. Intestinal cells contain large nuclei with large nucleoli and numerous autofluorescent granules in their cytoplasm. intestinal cell   WBbt:0005792
Male sensory ray 9 hypodermal cell, fuses with hypodermal syncytium R9_hyp lineage name: T.appapp, R9.p WBbt:0004789
Male sensory ray 8 hypodermal cell, fuses with hypodermal syncytium R8_hyp lineage name: T.appaap, R8.p WBbt:0004790

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004890 smp-2 D1037.2 Caenorhabditis elegans

8 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019