WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10510
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30 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABplaaapp   WBbt:0006136
embryonic cell ABpraappp   WBbt:0006270
embryonic cell ABplaappa   WBbt:0006519
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell ABprapppp   WBbt:0006056
embryonic cell ABprapppa   WBbt:0005909
embryonic cell ABarpaapa   WBbt:0005844
embryonic cell Cpapp   WBbt:0005897
embryonic cell Caaaa   WBbt:0005899
embryonic cell Cpapa   WBbt:0005962
embryonic cell Caapa   WBbt:0006123
embryonic cell ABplappap   WBbt:0006067
embryonic cell ABarppaap   WBbt:0006053
embryonic cell ABarppppp   WBbt:0006186
embryonic cell ABprappap   WBbt:0006220
embryonic cell ABarppapp   WBbt:0006240
embryonic cell ABprapapp   WBbt:0006290
embryonic cell Caaap   WBbt:0006267
embryonic cell ABarpappa   WBbt:0006273
embryonic cell ABplappaa   WBbt:0006371
embryonic cell ABarppppa   WBbt:0006300
embryonic cell ABarpappp   WBbt:0006305
embryonic cell ABplapapp   WBbt:0006413
embryonic cell ABarppapa   WBbt:0006529
embryonic cell ABprapapa   WBbt:0006510
embryonic cell ABplapppp   WBbt:0006656
embryonic cell ABplapppa   WBbt:0006697
embryonic cell ABplapapa   WBbt:0006677
embryonic cell Caapp   WBbt:0006722

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003623 nhr-25 F11C1.6 Caenorhabditis elegans

134 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 198th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 198 min post first-cleavage Ce WBls:0000309
  The time period encompassing the 197th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 197 min post first-cleavage Ce WBls:0000308
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 215th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 215 min post first-cleavage Ce WBls:0000326
  The time period encompassing the 214th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 214 min post first-cleavage Ce WBls:0000325
  The time period encompassing the 213rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 213 min post first-cleavage Ce WBls:0000324
  The time period encompassing the 212nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 212 min post first-cleavage Ce WBls:0000323
  The time period encompassing the 219th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 219 min post first-cleavage Ce WBls:0000330
  The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 218 min post first-cleavage Ce WBls:0000329
  The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 217 min post first-cleavage Ce WBls:0000328
  The time period encompassing the 216th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 216 min post first-cleavage Ce WBls:0000327
  The time period encompassing the 223rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 223 min post first-cleavage Ce WBls:0000334
  The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 222 min post first-cleavage Ce WBls:0000333
  The time period encompassing the 221st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 221 min post first-cleavage Ce WBls:0000332
  The time period encompassing the 220th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 220 min post first-cleavage Ce WBls:0000331
  The time period encompassing the 227th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 227 min post first-cleavage Ce WBls:0000338
  The time period encompassing the 226th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 226 min post first-cleavage Ce WBls:0000337
  The time period encompassing the 225th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 225 min post first-cleavage Ce WBls:0000336