WormMine: ExpressionPattern Expr10299

• Pattern: Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/
• Primary Identifier: Expr10299

2 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
embryonic cell	Ep		WBbt:0006612
embryonic cell	Ea		WBbt:0006733

1 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00001311	end-3	F58E10.5	Caenorhabditis elegans

14 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	The time period encompassing the 97th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		97 min post first-cleavage Ce	WBls:0000208
	The time period encompassing the 96th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		96 min post first-cleavage Ce	WBls:0000207
	The time period encompassing the 101st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		101 min post first-cleavage Ce	WBls:0000212
	The time period encompassing the 100th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		100 min post first-cleavage Ce	WBls:0000211
	The time period encompassing the 99th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		99 min post first-cleavage Ce	WBls:0000210
	The time period encompassing the 98th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		98 min post first-cleavage Ce	WBls:0000209
	The time period encompassing the 108th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		108 min post first-cleavage Ce	WBls:0000219
	The time period encompassing the 107th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		107 min post first-cleavage Ce	WBls:0000218
	The time period encompassing the 104th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		104 min post first-cleavage Ce	WBls:0000215
	The time period encompassing the 106th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		106 min post first-cleavage Ce	WBls:0000217
	The time period encompassing the 103rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		103 min post first-cleavage Ce	WBls:0000214
	The time period encompassing the 105th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		105 min post first-cleavage Ce	WBls:0000216
	The time period encompassing the 102nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		102 min post first-cleavage Ce	WBls:0000213
	The time period encompassing the 109th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree.		109 min post first-cleavage Ce	WBls:0000220