WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Life Stage :

Definition  The third stage larva of nematodes. Primary Identifier  WBls:0000108
Public Name  L3 larval stage

0 Anatomy Terms

1 Contained In

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins after hatching and ends when the nematode becomes adult. nematode larval stage WBls:0000105

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_upregulated
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated
  Transcripts that showed significantly decreased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr11516 The developmental profiles of Cbr-puf-2 and Cbr-puf-1.2 mRNA levels are qualitatively similar and are typical of germ line-expressed genes: low expression from embryo to L2 stages, slightly increasing expression at L3 and L4, and peak levels in adults. However, Cbr-puf-2 is over 100-fold more abundant than Cbr-puf-1.2.  
    Expr12798 tat-3 reporter signal first appears in embryos in the developing pharynx. In the fully formed alimentary system, very strong GFP fluorescence is observed in the muscle, marginal and buccal epithelial cells of the pharynx, the pharyngeal-intestinal valve and, with lesser intensity, the rectal epithelial cells. Seam cells display very strong fluorescence as soon as this lineage becomes established during embryonic development. In adults, moderate to weak fluorescence seems to arise from the XXX cells, some unidentified cells in the head and tail regions and the hypodermis. In the reproductive system, tat-3 reporter expression begins in the distal tip cells (DTC) in L1 and in the anchor cell (AC) in early L3. GFP signal is later visible in the dividing progeny of the vulval precursor cells (VPCs). In late L4, the anchor cell fuses with the uterine seam cell (utse), which does not express the reporter. The vulval cells continue exhibiting moderate fluorescence into the adulthood.  

1 Followed By

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva of nematodes. L4 larval stage WBls:0000109

1 Preceded By

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva of nematodes. L2 larval stage WBls:0000107

3 Sub Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The third stage larva. Brugia L3 WBls:0000081
  Strongyloides infective stage L3 larval stage. This stage can develop as a part of a free-living life-cycle, or from a parasitic, parthenogenic female stage. Strongyloides infective L3 WBls:0000680