WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. Description  Genes that showed differential expression in the comparision of germline-ablated animals fed on E. coli OP50 versus un-ablated animals fed E. coli OP50.
Primary Identifier  WBPaper00041466:PP_germline-ablation_regulated Regulated By Treatment  Germline ablation

1 Anatomy Terms

Definition Name Synonym Primary Identifier
cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes. germ line germline WBbt:0005784

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00089573 PPA00019 PPA00019 Pristionchus pacificus
WBGene00089579 PPA00025 PPA00025 Pristionchus pacificus
WBGene00089608 PPA00054 PPA00054 Pristionchus pacificus
WBGene00089629 PPA00075 PPA00075 Pristionchus pacificus
WBGene00089797 Ppa-inf-1 PPA00243 Pristionchus pacificus
WBGene00089807 PPA00253 PPA00253 Pristionchus pacificus
WBGene00089822 PPA00268 PPA00268 Pristionchus pacificus
WBGene00089871 Ppa-agmo-1 PPA00317 Pristionchus pacificus
WBGene00089884 Ppa-rpb-11 PPA00330 Pristionchus pacificus
WBGene00089890 Ppa-abcf-1 PPA00336 Pristionchus pacificus
WBGene00089891 PPA00337 PPA00337 Pristionchus pacificus
WBGene00089900 PPA00346 PPA00346 Pristionchus pacificus
WBGene00089902 Ppa-ruvb-1 PPA00348 Pristionchus pacificus
WBGene00089913 PPA00359 PPA00359 Pristionchus pacificus
WBGene00089943 PPA00389 PPA00389 Pristionchus pacificus
WBGene00089948 Ppa-mppa-1 PPA00394 Pristionchus pacificus
WBGene00089964 PPA00410 PPA00410 Pristionchus pacificus
WBGene00089965 PPA00411 PPA00411 Pristionchus pacificus
WBGene00090004 Ppa-znfx-1 PPA00450 Pristionchus pacificus
WBGene00090029 Ppa-vps-41 PPA00475 Pristionchus pacificus
WBGene00090086 PPA00532 PPA00532 Pristionchus pacificus
WBGene00090219 PPA00665 PPA00665 Pristionchus pacificus
WBGene00090252 PPA00698 PPA00698 Pristionchus pacificus
WBGene00090264 PPA00710 PPA00710 Pristionchus pacificus
WBGene00090382 Ppa-smg-6 PPA00828 Pristionchus pacificus
WBGene00090397 Ppa-ung-1 PPA00843 Pristionchus pacificus
WBGene00090408 Ppa-slc-30A9 PPA00854 Pristionchus pacificus
WBGene00090436 Ppa-mlh-1 PPA00882 Pristionchus pacificus
WBGene00090521 PPA00967 PPA00967 Pristionchus pacificus
WBGene00090522 Ppa-pph-6 PPA00968 Pristionchus pacificus

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule