WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To analyze the differential expressed genes, authors compared atf-4(tm4397) and ldIs119 to wild type using Degust with the following settings: RPKM with minimum 5 counts using edgeR with a false discovery rate (FDR) of 0.1 and an absolute log fold change (FC) of 1 relative to WT. Description  Most regulated genes by atf-4(tm4397) and ATF-4 overexpression transgene ldIs119 comparing to N2.
Primary Identifier  WBPaper00062518:atf-4_regulated

0 Anatomy Terms

39 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000114 alh-8 F13D12.4 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000221 atf-4 T04C10.4 Caenorhabditis elegans
WBGene00000649 col-73 F11G11.12 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000677 col-103 F56B3.1 Caenorhabditis elegans
WBGene00000733 col-160 F57B1.4 Caenorhabditis elegans
WBGene00000784 cpr-4 F44C4.3 Caenorhabditis elegans
WBGene00000786 cpr-6 C25B8.3 Caenorhabditis elegans
WBGene00001155 ech-6 T05G5.6 Caenorhabditis elegans
WBGene00001244 elo-6 F41H10.8 Caenorhabditis elegans
WBGene00001385 far-1 F02A9.2 Caenorhabditis elegans
WBGene00002258 lbp-6 W02D3.5 Caenorhabditis elegans
WBGene00003214 mel-32 C05D11.11 Caenorhabditis elegans
WBGene00003370 mlc-2 C36E6.5 Caenorhabditis elegans
WBGene00004397 rol-6 T01B7.7 Caenorhabditis elegans
WBGene00004990 spp-5 T08A9.9 Caenorhabditis elegans
WBGene00011561 ttr-15 T07C4.5 Caenorhabditis elegans
WBGene00012253 clec-50 W04E12.8 Caenorhabditis elegans
WBGene00012608 hphd-1 Y38F1A.6 Caenorhabditis elegans
WBGene00013489 col-42 Y69H2.14 Caenorhabditis elegans
WBGene00016659 C45B2.2 C45B2.2 Caenorhabditis elegans
WBGene00016943 acdh-1 C55B7.4 Caenorhabditis elegans
WBGene00017691 ilys-5 F22A3.6 Caenorhabditis elegans
WBGene00018811 pmt-2 F54D11.1 Caenorhabditis elegans
WBGene00019322 ahcy-1 K02F2.2 Caenorhabditis elegans
WBGene00019619 asp-14 K10C2.3 Caenorhabditis elegans
WBGene00022645 irg-8 ZK6.11 Caenorhabditis elegans
WBGene00010135 F55H12.4 F55H12.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000221 atf-4 T04C10.4 Caenorhabditis elegans

0 Regulated By Molecule