WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 235, W01F3.2_1554-Y106G6D.8, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:W01F3.2_1554-Y106G6D.8

0 Anatomy Terms

121 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000555 cnc-1 R09B5.2 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00001388 far-4 F15B9.2 Caenorhabditis elegans
WBGene00002090 ins-7 ZK1251.2 Caenorhabditis elegans
WBGene00003099 lys-10 F17E9.11 Caenorhabditis elegans
WBGene00003529 nas-10 K09C8.3 Caenorhabditis elegans
WBGene00003734 nhx-6 F58E1.6 Caenorhabditis elegans
WBGene00003771 nlp-33 T19C4.7 Caenorhabditis elegans
WBGene00003876 pept-2 C06G8.2 Caenorhabditis elegans
WBGene00004068 pnk-1 C10G11.5 Caenorhabditis elegans
WBGene00004810 skr-4 Y60A3A.18 Caenorhabditis elegans
WBGene00005642 srp-1 C05E4.3 Caenorhabditis elegans
WBGene00006608 tre-2 T05A12.2 Caenorhabditis elegans
WBGene00006656 twk-1 F21C3.1 Caenorhabditis elegans
WBGene00006660 twk-5 B0334.2 Caenorhabditis elegans
WBGene00007969 acs-19 C36A4.9 Caenorhabditis elegans
WBGene00007989 fipr-22 C37A5.2 Caenorhabditis elegans
WBGene00008234 C50F4.9 C50F4.9 Caenorhabditis elegans
WBGene00008602 oac-14 F09B9.1 Caenorhabditis elegans
WBGene00009213 thn-1 F28D1.3 Caenorhabditis elegans
WBGene00009339 F32G8.3 F32G8.3 Caenorhabditis elegans
WBGene00010005 cnc-7 F53H2.2 Caenorhabditis elegans
WBGene00010440 ttr-51 JC8.8 Caenorhabditis elegans
WBGene00010538 ttr-3 K03H1.3 Caenorhabditis elegans
WBGene00010539 ttr-2 K03H1.4 Caenorhabditis elegans
WBGene00010541 ttr-1 K03H1.6 Caenorhabditis elegans
WBGene00010799 chil-12 M01B2.6 Caenorhabditis elegans
WBGene00011446 T04F8.8 T04F8.8 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule