WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 128, F40F8.4-C33G8.4, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F40F8.4-C33G8.4

0 Anatomy Terms

60 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000285 cal-1 C13C12.1 Caenorhabditis elegans
WBGene00000287 cal-3 M02B7.6 Caenorhabditis elegans
WBGene00001392 far-8 K02F3.3 Caenorhabditis elegans
WBGene00002118 ins-35 K02E2.4 Caenorhabditis elegans
WBGene00003550 nas-32 T02B11.7 Caenorhabditis elegans
WBGene00004359 rhr-2 B0240.1 Caenorhabditis elegans
WBGene00006886 vap-1 F11C7.3 Caenorhabditis elegans
WBGene00008270 C53A5.13 C53A5.13 Caenorhabditis elegans
WBGene00008490 cyts-1 F01D4.8 Caenorhabditis elegans
WBGene00008735 F13D2.1 F13D2.1 Caenorhabditis elegans
WBGene00009388 F35B12.9 F35B12.9 Caenorhabditis elegans
WBGene00009447 F35H8.2 F35H8.2 Caenorhabditis elegans
WBGene00009500 cfh-1 F36H2.3 Caenorhabditis elegans
WBGene00009896 scl-3 F49E11.11 Caenorhabditis elegans
WBGene00009968 fig-1 F53B7.5 Caenorhabditis elegans
WBGene00012416 Y7A9A.1 Y7A9A.1 Caenorhabditis elegans
WBGene00013292 Y57G11A.4 Y57G11A.4 Caenorhabditis elegans
WBGene00013481 Y69H2.3 Y69H2.3 Caenorhabditis elegans
WBGene00013609 clec-37 Y102A5B.3 Caenorhabditis elegans
WBGene00015768 C14C11.4 C14C11.4 Caenorhabditis elegans
WBGene00016264 C30F12.5 C30F12.5 Caenorhabditis elegans
WBGene00018692 F52E1.2 F52E1.2 Caenorhabditis elegans
WBGene00021814 mfsd-8.3 Y53G8AR.7 Caenorhabditis elegans
WBGene00023502 clec-184 F08G5.7 Caenorhabditis elegans
WBGene00017126 E04F6.6 E04F6.6 Caenorhabditis elegans
WBGene00011072 tag-209 R06F6.11 Caenorhabditis elegans
WBGene00009577 F40F8.4 F40F8.4 Caenorhabditis elegans
WBGene00016522 fbxa-38 C39B5.4 Caenorhabditis elegans
WBGene00021532 Y42G9A.2 Y42G9A.2 Caenorhabditis elegans
WBGene00022786 ZK652.8 ZK652.8 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule