WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 195, C38C3.6-npr-7, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C38C3.6-npr-7

0 Anatomy Terms

76 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000062 acr-23 F59B1.9 Caenorhabditis elegans
WBGene00000166 apt-9 W04G3.4 Caenorhabditis elegans
WBGene00000295 cat-1 W01C8.6 Caenorhabditis elegans
WBGene00000296 cat-2 B0432.5 Caenorhabditis elegans
WBGene00000446 ceh-23 ZK652.5 Caenorhabditis elegans
WBGene00000793 crh-1 Y41C4A.4 Caenorhabditis elegans
WBGene00001190 egl-23 Y37A1B.11 Caenorhabditis elegans
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
WBGene00001530 gcy-3 R134.1 Caenorhabditis elegans
WBGene00001593 glc-3 ZC317.3 Caenorhabditis elegans
WBGene00001625 glt-7 W03G1.1 Caenorhabditis elegans
WBGene00002242 kvs-1 C53C9.3 Caenorhabditis elegans
WBGene00003033 lin-48 F34D10.5 Caenorhabditis elegans
WBGene00003166 mec-2 F14D12.4 Caenorhabditis elegans
WBGene00003176 mec-14 F37C12.12 Caenorhabditis elegans
WBGene00003909 pag-3 F45B8.4 Caenorhabditis elegans
WBGene00005947 srx-56 C03G6.2 Caenorhabditis elegans
WBGene00005959 srx-68 K07C6.11 Caenorhabditis elegans
WBGene00006424 ctbp-1 F49E10.5 Caenorhabditis elegans
WBGene00006669 twk-14 K01D12.4 Caenorhabditis elegans
WBGene00006671 twk-17 C44E12.3 Caenorhabditis elegans
WBGene00006676 twk-23 F19D8.1 Caenorhabditis elegans
WBGene00006748 unc-8 R13A1.4 Caenorhabditis elegans
WBGene00007115 B0198.2 B0198.2 Caenorhabditis elegans
WBGene00007116 B0198.3 B0198.3 Caenorhabditis elegans
WBGene00007396 rnp-9 C07A4.1 Caenorhabditis elegans
WBGene00008443 pde-3 E01F3.1 Caenorhabditis elegans
WBGene00008599 F09A5.2 F09A5.2 Caenorhabditis elegans
WBGene00008840 F15A4.5 F15A4.5 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule