WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 1, Y40H4A.2-ZK1053.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:Y40H4A.2-ZK1053.2

0 Anatomy Terms

410 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000771 cpb-2 C30B5.3 Caenorhabditis elegans
WBGene00001245 elo-7 F56H11.3 Caenorhabditis elegans
WBGene00001414 fer-1 F43G9.6 Caenorhabditis elegans
WBGene00001538 gcy-12 F08B1.2 Caenorhabditis elegans
WBGene00001944 his-70 E03A3.4 Caenorhabditis elegans
WBGene00002120 ins-37 F08G2.6 Caenorhabditis elegans
WBGene00002186 kel-10 T16H12.6 Caenorhabditis elegans
WBGene00002193 kin-5 T13H10.1 Caenorhabditis elegans
WBGene00002198 kin-14 F22D6.1 Caenorhabditis elegans
WBGene00003562 ncr-2 F09G8.4 Caenorhabditis elegans
WBGene00004084 pph-2 C29E6.3 Caenorhabditis elegans
WBGene00004906 snf-7 ZK1010.9 Caenorhabditis elegans
WBGene00004958 spe-4 ZK524.1 Caenorhabditis elegans
WBGene00004962 spe-8 F53G12.6 Caenorhabditis elegans
WBGene00004963 spe-9 C17D12.6 Caenorhabditis elegans
WBGene00004969 spe-15 F47G6.4 Caenorhabditis elegans
WBGene00004971 spe-17 ZK617.3 Caenorhabditis elegans
WBGene00004976 spe-41 K01A11.4 Caenorhabditis elegans
WBGene00006058 sst-20 F54C1.9 Caenorhabditis elegans
WBGene00006193 str-146 F58G4.6 Caenorhabditis elegans
WBGene00006224 str-180 T10H9.6 Caenorhabditis elegans
WBGene00006409 hdl-2 C09G9.4 Caenorhabditis elegans
WBGene00006449 alg-4 ZK757.3 Caenorhabditis elegans
WBGene00006553 tbx-34 Y47D3A.10 Caenorhabditis elegans
WBGene00006624 try-6 F48A9.3 Caenorhabditis elegans
WBGene00006644 tsp-18 F59G1.2 Caenorhabditis elegans
WBGene00006645 tsp-19 D2092.7 Caenorhabditis elegans
WBGene00006689 twk-37 C48E7.9 Caenorhabditis elegans
WBGene00007049 tag-191 C53A5.4 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule