WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering. Description  Transcripts that showed significantly altered expression after 48 hour exposure to sAg-MNP.
Primary Identifier  WBPaper00049311:sAg-MNP_regulated

0 Anatomy Terms

207 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000555 cnc-1 R09B5.2 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000603 col-14 C46A5.3 Caenorhabditis elegans
WBGene00000612 col-35 C15A11.1 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00000614 col-37 ZK863.2 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000621 col-44 F54B11.2 Caenorhabditis elegans
WBGene00000622 col-45 F53G12.7 Caenorhabditis elegans
WBGene00000625 col-48 Y54E10BL.2 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000659 col-84 K12D12.3 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00000672 col-97 ZK1010.7 Caenorhabditis elegans
WBGene00000676 col-102 C18H7.3 Caenorhabditis elegans
WBGene00000678 col-104 F58F6.1 Caenorhabditis elegans
WBGene00000683 col-109 Y38C1BA.3 Caenorhabditis elegans
WBGene00000688 col-114 D2024.8 Caenorhabditis elegans
WBGene00000697 col-123 W08D2.6 Caenorhabditis elegans
WBGene00000703 col-129 M18.1 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00000734 col-161 C50B6.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
Ag nanoparticles WBMol:00005288