WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 273, C01G10.14-dct-9_3227, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:C01G10.14-dct-9_3227

0 Anatomy Terms

234 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000838 cul-3 Y108G3AL.1 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00004899 snb-5 C30A5.5 Caenorhabditis elegans
WBGene00004901 snf-2 F55H12.1 Caenorhabditis elegans
WBGene00004909 snf-10 Y32F6A.2 Caenorhabditis elegans
WBGene00004960 spe-6 Y66D12A.20 Caenorhabditis elegans
WBGene00004964 spe-10 AC3.10 Caenorhabditis elegans
WBGene00004973 spe-27 C06E7.6 Caenorhabditis elegans
WBGene00006509 tag-164 Y76A2A.1 Caenorhabditis elegans
WBGene00006625 try-7 ZC581.6 Caenorhabditis elegans
WBGene00007081 AH6.3 AH6.3 Caenorhabditis elegans
WBGene00007156 B0379.2 B0379.2 Caenorhabditis elegans
WBGene00007239 C01G10.14 C01G10.14 Caenorhabditis elegans
WBGene00007335 C05C12.1 C05C12.1 Caenorhabditis elegans
WBGene00007610 C15H7.3 C15H7.3 Caenorhabditis elegans
WBGene00007763 C27B7.6 C27B7.6 Caenorhabditis elegans
WBGene00007791 C28A5.6 C28A5.6 Caenorhabditis elegans
WBGene00007986 C36F7.5 C36F7.5 Caenorhabditis elegans
WBGene00008124 C47A4.3 C47A4.3 Caenorhabditis elegans
WBGene00008186 best-11 C49A1.3 Caenorhabditis elegans
WBGene00008433 marc-2 D2089.2 Caenorhabditis elegans
WBGene00008731 F13B12.3 F13B12.3 Caenorhabditis elegans
WBGene00008811 F14F7.4 F14F7.4 Caenorhabditis elegans
WBGene00009075 F23B2.7 F23B2.7 Caenorhabditis elegans
WBGene00009129 F25H5.7 F25H5.7 Caenorhabditis elegans
WBGene00009149 F26D2.10 F26D2.10 Caenorhabditis elegans
WBGene00009324 ttbk-3 F32B6.10 Caenorhabditis elegans
WBGene00009449 F35H8.4 F35H8.4 Caenorhabditis elegans
WBGene00009470 F36D3.4 F36D3.4 Caenorhabditis elegans
WBGene00009471 F36D3.5 F36D3.5 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule