WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 300, K05C4.4-fbxc-46, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:K05C4.4-fbxc-46

0 Anatomy Terms

22 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004959 spe-5 Y110A7A.12 Caenorhabditis elegans
WBGene00011431 T04D3.1 T04D3.1 Caenorhabditis elegans
WBGene00021076 W07E6.5 W07E6.5 Caenorhabditis elegans
WBGene00022224 set-28 Y73B3B.2 Caenorhabditis elegans
WBGene00020988 W03D8.7 W03D8.7 Caenorhabditis elegans
WBGene00014918 fbxa-123 Y53C10A.14 Caenorhabditis elegans
WBGene00010581 K05C4.4 K05C4.4 Caenorhabditis elegans
WBGene00018661 F52C6.4 F52C6.4 Caenorhabditis elegans
WBGene00018658 bath-22 F52C6.1 Caenorhabditis elegans
WBGene00021055 W06A11.4 W06A11.4 Caenorhabditis elegans
WBGene00013246 Y57A10A.1 Y57A10A.1 Caenorhabditis elegans
WBGene00013248 Y57A10A.3 Y57A10A.3 Caenorhabditis elegans
WBGene00011811 T16H12.1 T16H12.1 Caenorhabditis elegans
WBGene00021887 fbxc-45 Y54G2A.22 Caenorhabditis elegans
WBGene00010209 fbxa-191 F57G4.4 Caenorhabditis elegans
WBGene00010212 fbxa-192 F57G4.8 Caenorhabditis elegans
WBGene00012568 fbxa-212 Y37H2A.8 Caenorhabditis elegans
WBGene00012569 fbxc-46 Y37H2A.9 Caenorhabditis elegans
WBGene00019267 H39E20.1 H39E20.1 Caenorhabditis elegans
WBGene00018577 asna-2 F47G3.2 Caenorhabditis elegans
WBGene00020338 T08A9.6 T08A9.6 Caenorhabditis elegans
WBGene00016346 fbxa-120 C33E10.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule