WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 62, fbxc-28-sdz-28, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:fbxc-28-sdz-28

0 Anatomy Terms

54 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000406 cdk-4 F18H3.5 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00001103 dsl-1 W09G12.4 Caenorhabditis elegans
WBGene00001104 dsl-2 W09G12.1 Caenorhabditis elegans
WBGene00004813 skr-7 Y47D7A.1 Caenorhabditis elegans
WBGene00004814 skr-8 C52D10.9 Caenorhabditis elegans
WBGene00004815 skr-9 C52D10.7 Caenorhabditis elegans
WBGene00004816 skr-10 Y105C5B.13 Caenorhabditis elegans
WBGene00004818 skr-12 C52D10.6 Caenorhabditis elegans
WBGene00004819 skr-13 C52D10.8 Caenorhabditis elegans
WBGene00004820 skr-14 Y47D7A.8 Caenorhabditis elegans
WBGene00005643 srp-2 C05E4.1 Caenorhabditis elegans
WBGene00006902 vet-6 F44F1.7 Caenorhabditis elegans
WBGene00007128 memb-1 B0272.2 Caenorhabditis elegans
WBGene00007850 C31G12.1 C31G12.1 Caenorhabditis elegans
WBGene00009067 F23A7.1 F23A7.1 Caenorhabditis elegans
WBGene00009728 sdz-19 F45E6.6 Caenorhabditis elegans
WBGene00010808 sepa-1 M01E5.6 Caenorhabditis elegans
WBGene00011229 R11.4 R11.4 Caenorhabditis elegans
WBGene00011805 T16G12.4 T16G12.4 Caenorhabditis elegans
WBGene00012247 W04E12.2 W04E12.2 Caenorhabditis elegans
WBGene00013508 Y71A12B.11 Y71A12B.11 Caenorhabditis elegans
WBGene00013653 ifas-3 Y105C5B.14 Caenorhabditis elegans
WBGene00015112 B0281.5 B0281.5 Caenorhabditis elegans
WBGene00016453 vet-2 C35E7.1 Caenorhabditis elegans
WBGene00017140 EEED8.12 EEED8.12 Caenorhabditis elegans
WBGene00018130 F36H12.17 F36H12.17 Caenorhabditis elegans
WBGene00019558 srbc-12 K09C6.4 Caenorhabditis elegans
WBGene00020073 sdz-28 R52.1 Caenorhabditis elegans
WBGene00044798 tbx-43 Y46E12A.4 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule