WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 161, sdz-10-fbxb-62, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:sdz-10-fbxb-62

0 Anatomy Terms

122 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000546 clp-6 Y77E11A.10 Caenorhabditis elegans
WBGene00001437 fkh-5 F26A1.2 Caenorhabditis elegans
WBGene00001842 her-1 ZK287.8 Caenorhabditis elegans
WBGene00003595 ngn-1 Y69A2AR.29 Caenorhabditis elegans
WBGene00003976 pes-1 T28H11.4 Caenorhabditis elegans
WBGene00006195 str-148 M01D1.1 Caenorhabditis elegans
WBGene00006547 tbx-11 F40H6.4 Caenorhabditis elegans
WBGene00006938 wee-1.1 F35H8.7 Caenorhabditis elegans
WBGene00007523 C11G6.2 C11G6.2 Caenorhabditis elegans
WBGene00007769 C27C7.7 C27C7.7 Caenorhabditis elegans
WBGene00010219 F57G9.3 F57G9.3 Caenorhabditis elegans
WBGene00010269 F58G1.7 F58G1.7 Caenorhabditis elegans
WBGene00011432 sdz-30 T04D3.2 Caenorhabditis elegans
WBGene00012064 fbxb-115 T26H2.2 Caenorhabditis elegans
WBGene00013278 Y57A10B.6 Y57A10B.6 Caenorhabditis elegans
WBGene00013280 Y57A10C.1 Y57A10C.1 Caenorhabditis elegans
WBGene00013583 ceh-51 Y80D3A.3 Caenorhabditis elegans
WBGene00013816 Y116F11A.1 Y116F11A.1 Caenorhabditis elegans
WBGene00015129 sdz-1 B0303.8 Caenorhabditis elegans
WBGene00015138 B0310.2 B0310.2 Caenorhabditis elegans
WBGene00015830 fbxb-98 C16C4.6 Caenorhabditis elegans
WBGene00016455 C35E7.3 C35E7.3 Caenorhabditis elegans
WBGene00016550 C40A11.7 C40A11.7 Caenorhabditis elegans
WBGene00016886 fbxb-96 C52E2.7 Caenorhabditis elegans
WBGene00017343 F10E7.1 F10E7.1 Caenorhabditis elegans
WBGene00017473 F14H12.6 F14H12.6 Caenorhabditis elegans
WBGene00017601 ets-7 F19F10.5 Caenorhabditis elegans
WBGene00018437 btb-8 F45C12.6 Caenorhabditis elegans
WBGene00018754 F53C3.11 F53C3.11 Caenorhabditis elegans
WBGene00018786 hmbx-1 F54A5.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule