WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Bioconductor package LIMMA was used to determine differentially expressed genes. The P-values were adjusted for multiple testing with a false-discovery rate (50). Probe sets with fold-change > 1.5 and q-value < 0.05 were used as a cut-off for C. elegans microarrays Description  Genes with significant decrease of expression in UPF1 smg-2(RNAi) comparing to control.
Primary Identifier  WBPaper00042561:smg-2(RNAi)_downregulated

0 Anatomy Terms

630 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
WBGene00000262 bra-1 F54B11.6 Caenorhabditis elegans
WBGene00000395 cdh-3 ZK112.7 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000406 cdk-4 F18H3.5 Caenorhabditis elegans
WBGene00000439 ceh-16 C13G5.1 Caenorhabditis elegans
WBGene00000445 ceh-22 F29F11.5 Caenorhabditis elegans
WBGene00000462 ceh-41 T26C11.5 Caenorhabditis elegans
WBGene00000469 ces-2 ZK909.4 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000636 col-60 F22D6.10 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000650 col-74 ZK1248.2 Caenorhabditis elegans
WBGene00000663 col-88 W05G11.3 Caenorhabditis elegans
WBGene00000666 col-91 F09G8.6 Caenorhabditis elegans
WBGene00000672 col-97 ZK1010.7 Caenorhabditis elegans
WBGene00000687 col-113 C34D4.15 Caenorhabditis elegans
WBGene00000694 col-120 Y11D7A.11 Caenorhabditis elegans
WBGene00000695 col-121 F56D5.1 Caenorhabditis elegans
WBGene00000729 col-156 F57B7.3 Caenorhabditis elegans
WBGene00000734 col-161 C50B6.4 Caenorhabditis elegans
WBGene00000735 col-162 Y2H9A.3 Caenorhabditis elegans
WBGene00000740 col-167 T10E10.2 Caenorhabditis elegans
WBGene00000764 coq-4 T03F1.2 Caenorhabditis elegans
WBGene00000785 cpr-5 W07B8.5 Caenorhabditis elegans
WBGene00000819 csp-1 Y48E1B.13 Caenorhabditis elegans
WBGene00000988 dhs-25 F09E10.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004880 smg-2 Y48G8AL.6 Caenorhabditis elegans

0 Regulated By Molecule