WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed. Description  Genes up regulated in tax-6(ok2065) comparing to in N2.
Primary Identifier  WBPaper00038172:tax-6null_up_regulated

0 Anatomy Terms

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000028 abu-5 Y105C5A.4 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000120 aly-1 C01F6.5 Caenorhabditis elegans
WBGene00000138 amx-2 B0019.1 Caenorhabditis elegans
WBGene00000176 aqp-8 K02G10.7 Caenorhabditis elegans
WBGene00000222 atf-6 F45E6.2 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000276 byn-1 F57B9.5 Caenorhabditis elegans
WBGene00000277 cab-1 C23H4.1 Caenorhabditis elegans
WBGene00000286 cal-2 C18E9.1 Caenorhabditis elegans
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000480 cgp-1 Y38C9A.2 Caenorhabditis elegans
WBGene00000516 cki-1 T05A6.1 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000596 col-7 C15A11.5 Caenorhabditis elegans
WBGene00000597 col-8 F11H8.3 Caenorhabditis elegans
WBGene00000601 col-12 F15H10.1 Caenorhabditis elegans
WBGene00000602 col-13 F15H10.2 Caenorhabditis elegans
WBGene00000608 col-19 ZK1193.1 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000612 col-35 C15A11.1 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006527 tax-6 C02F4.2 Caenorhabditis elegans

0 Regulated By Molecule