WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison. Description  Genes that are up-regulated in wild-type N2 larvae compared to elt-7(tm840) larvae.
Primary Identifier  WBPaper00053606:N2_vs_elt-7(tm840)_upregulated

0 Anatomy Terms

45 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000793 crh-1 Y41C4A.4 Caenorhabditis elegans
WBGene00001080 dpy-21 Y59A8B.1 Caenorhabditis elegans
WBGene00001581 gfi-1 F57F4.3 Caenorhabditis elegans
WBGene00001745 gsa-1 R06A10.2 Caenorhabditis elegans
WBGene00001994 hpk-1 F20B6.8 Caenorhabditis elegans
WBGene00002025 hsp-60 Y22D7AL.5 Caenorhabditis elegans
WBGene00002915 let-805 H19M22.2 Caenorhabditis elegans
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
WBGene00003559 ncl-1 ZK112.2 Caenorhabditis elegans
WBGene00003675 nhr-85 W05B5.3 Caenorhabditis elegans
WBGene00003678 nhr-88 K08A2.5 Caenorhabditis elegans
WBGene00003903 pab-2 F18H3.3 Caenorhabditis elegans
WBGene00004128 pqn-41 F53A3.4 Caenorhabditis elegans
WBGene00004203 swsn-1 Y113G7B.23 Caenorhabditis elegans
WBGene00006436 ttn-1 W06H8.8 Caenorhabditis elegans
WBGene00006807 unc-75 C17D12.2 Caenorhabditis elegans
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
WBGene00006912 vha-3 Y38F2AL.4 Caenorhabditis elegans
WBGene00007030 epc-1 Y111B2A.11 Caenorhabditis elegans
WBGene00010306 golg-4 F59A2.6 Caenorhabditis elegans
WBGene00010829 M02B1.4 M02B1.4 Caenorhabditis elegans
WBGene00012802 set-25 Y43F4B.3 Caenorhabditis elegans
WBGene00012828 Y43F8C.6 Y43F8C.6 Caenorhabditis elegans
WBGene00013004 mrpl-37 Y48E1B.5 Caenorhabditis elegans
WBGene00013167 wshc-4 Y53F4B.21 Caenorhabditis elegans
WBGene00013188 smg-9 Y54E2A.2 Caenorhabditis elegans
WBGene00013544 Y75B8A.7 Y75B8A.7 Caenorhabditis elegans
WBGene00018024 F35A5.1 F35A5.1 Caenorhabditis elegans
WBGene00018932 mrpl-2 F56B3.8 Caenorhabditis elegans
WBGene00019017 bcf-1 F57F4.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015981 elt-7 C18G1.2 Caenorhabditis elegans

0 Regulated By Molecule