WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in nos-1(gv5)nos-2(RNAi) comparing to in wild type, in primordial germ cells (PGCs) at L1 larva, according to SMARTseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

455 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000115 alh-9 F01F1.6 Caenorhabditis elegans
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000159 aps-1 F29G9.3 Caenorhabditis elegans
WBGene00000165 aps-3 Y48G8AL.14 Caenorhabditis elegans
WBGene00000192 arl-8 Y57G11C.13 Caenorhabditis elegans
WBGene00000230 atp-3 F27C1.7 Caenorhabditis elegans
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
WBGene00000250 bir-2 C50B8.2 Caenorhabditis elegans
WBGene00000263 F23H11.5 F23H11.5 Caenorhabditis elegans
WBGene00000270 bre-5 T12G3.8 Caenorhabditis elegans
WBGene00000371 cox-5B F26E4.9 Caenorhabditis elegans
WBGene00000416 ced-2 Y41D4B.13 Caenorhabditis elegans
WBGene00000546 clp-6 Y77E11A.10 Caenorhabditis elegans
WBGene00000777 cpn-1 F43G9.9 Caenorhabditis elegans
WBGene00000815 csn-3 Y38C1AA.2 Caenorhabditis elegans
WBGene00000830 ctl-1 Y54G11A.6 Caenorhabditis elegans
WBGene00000996 dif-1 F49E8.5 Caenorhabditis elegans
WBGene00001035 dnj-17 T03F6.2 Caenorhabditis elegans
WBGene00001044 dnj-26 Y39C12A.8 Caenorhabditis elegans
WBGene00001088 dpy-30 ZK863.6 Caenorhabditis elegans
WBGene00001309 emr-1 M01D7.6 Caenorhabditis elegans
WBGene00001338 ears-2 T07A9.2 Caenorhabditis elegans
WBGene00001404 fbp-1 K07A3.1 Caenorhabditis elegans
WBGene00001566 acdh-13 C28C12.9 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001607 gln-6 C28D4.3 Caenorhabditis elegans
WBGene00001647 gna-2 T23G11.2 Caenorhabditis elegans
WBGene00001689 gpr-2 C38C10.4 Caenorhabditis elegans
WBGene00001816 haf-6 Y48G8AL.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

0 Regulated By Gene

0 Regulated By Molecule