WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  edgeR Description  Transcripts that showed increased expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, and their mRNAs do not co-purify with SMG-2.
Primary Identifier  WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
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0 Anatomy Terms

65 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00004883 smg-5 W02D3.8 Caenorhabditis elegans
WBGene00006627 tsp-1 C02F5.8 Caenorhabditis elegans
WBGene00006628 tsp-2 C02F5.11 Caenorhabditis elegans
WBGene00007097 B0024.4 B0024.4 Caenorhabditis elegans
WBGene00009397 clec-66 F35C5.9 Caenorhabditis elegans
WBGene00009710 clc-11 F44G3.10 Caenorhabditis elegans
WBGene00011799 T16G1.5 T16G1.5 Caenorhabditis elegans
WBGene00011882 nstp-9 T21B6.5 Caenorhabditis elegans
WBGene00012583 clec-4 Y38E10A.5 Caenorhabditis elegans
WBGene00012683 asp-17 Y39B6A.24 Caenorhabditis elegans
WBGene00013078 ttr-25 Y51A2D.10 Caenorhabditis elegans
WBGene00013654 Y105C5B.15 Y105C5B.15 Caenorhabditis elegans
WBGene00015577 ugt-64 C07G3.9 Caenorhabditis elegans
WBGene00016061 hpo-15 C24G6.6 Caenorhabditis elegans
WBGene00016795 C49H3.12 C49H3.12 Caenorhabditis elegans
WBGene00018660 F52C6.3 F52C6.3 Caenorhabditis elegans
WBGene00018708 oac-32 F52F10.4 Caenorhabditis elegans
WBGene00019744 M02H5.8 M02H5.8 Caenorhabditis elegans
WBGene00020760 clc-19 T24C4.4 Caenorhabditis elegans
WBGene00020761 T24C4.5 T24C4.5 Caenorhabditis elegans
WBGene00021739 Y50D4A.5 Y50D4A.5 Caenorhabditis elegans
WBGene00044988 W01A8.8 W01A8.8 Caenorhabditis elegans
WBGene00077558 T06D10.3 T06D10.3 Caenorhabditis elegans
WBGene00007766 C27C7.1 C27C7.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004879 smg-1 C48B6.6 Caenorhabditis elegans

0 Regulated By Molecule