WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in lin-15B(n744) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-15B(n744)_upregulated

0 Anatomy Terms

337 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
WBGene00000267 bre-2 Y39E4B.9 Caenorhabditis elegans
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
WBGene00000622 col-45 F53G12.7 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00000911 daf-15 C10C5.6 Caenorhabditis elegans
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
WBGene00001112 duo-3 Y106G6H.12 Caenorhabditis elegans
WBGene00001372 exo-3 R09B3.1 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001599 glh-2 C55B7.1 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001661 gop-2 C34E10.2 Caenorhabditis elegans
WBGene00001662 gop-3 C34E10.1 Caenorhabditis elegans
WBGene00001670 gpa-8 F56H9.3 Caenorhabditis elegans
WBGene00001671 gpa-9 F56H9.4 Caenorhabditis elegans
WBGene00001678 gpa-16 Y95B8A.5 Caenorhabditis elegans
WBGene00001683 gpd-1 T09F3.3 Caenorhabditis elegans
WBGene00001686 gpd-4 F33H1.2 Caenorhabditis elegans
WBGene00001816 haf-6 Y48G8AL.11 Caenorhabditis elegans
WBGene00001862 him-3 ZK381.1 Caenorhabditis elegans
WBGene00001872 him-14 ZK1127.11 Caenorhabditis elegans
WBGene00001977 hmg-12 Y17G7A.1 Caenorhabditis elegans
WBGene00002032 htp-1 F41H10.10 Caenorhabditis elegans
WBGene00002033 htp-2 Y73B6BL.2 Caenorhabditis elegans
WBGene00002063 ife-5 Y57A10A.30 Caenorhabditis elegans
WBGene00002077 imb-3 C53D5.6 Caenorhabditis elegans
WBGene00002144 inx-22 Y47G6A.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023497 lin-15B ZK662.4 Caenorhabditis elegans

0 Regulated By Molecule