WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly decreased expression in 24-cell stage embryo of chd-3(eh4) animals, comparing to in N2 animals, both fed with gfp control RNAi vector.
Primary Identifier  WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
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0 Anatomy Terms

665 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000081 ads-1 Y50D7A.7 Caenorhabditis elegans
WBGene00000088 aex-5 F32A7.6 Caenorhabditis elegans
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000196 aars-1 W02B12.6 Caenorhabditis elegans
WBGene00000212 asm-2 ZK455.4 Caenorhabditis elegans
WBGene00000213 asm-3 W03G1.7 Caenorhabditis elegans
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000217 asp-4 R12H7.2 Caenorhabditis elegans
WBGene00000218 asp-5 F21F8.3 Caenorhabditis elegans
WBGene00000219 asp-6 F21F8.7 Caenorhabditis elegans
WBGene00000281 cah-3 K05G3.3 Caenorhabditis elegans
WBGene00000283 cah-5 R173.1 Caenorhabditis elegans
WBGene00000391 cdd-1 C47D2.2 Caenorhabditis elegans
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000473 cey-2 F46F11.2 Caenorhabditis elegans
WBGene00000496 chs-1 T25G3.2 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000652 col-76 M110.1 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000677 col-103 F56B3.1 Caenorhabditis elegans
WBGene00000712 col-139 F41F3.4 Caenorhabditis elegans
WBGene00000713 col-140 F26F12.1 Caenorhabditis elegans
WBGene00000715 col-142 T15B7.4 Caenorhabditis elegans
WBGene00000716 col-143 T15B7.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1. Fourth cleavage of the AB lineage. Contains 24 cells. 24-cell embryo Ce WBls:0000085

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000482 chd-3 T14G8.1 Caenorhabditis elegans

0 Regulated By Molecule