WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Description  Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain MY15 to pathogenic B. thuringiensis B-18247.
Primary Identifier  WBPaper00040209:B.thuringiensis_downregulated_MY15 Regulated By Treatment  Bacteria infection: Bacillus thuringiensis B-18247

0 Anatomy Terms

453 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000095 aha-1 C25A1.11 Caenorhabditis elegans
WBGene00000107 alh-1 F54D8.3 Caenorhabditis elegans
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000148 aph-2 ZC434.6 Caenorhabditis elegans
WBGene00000216 asp-3 H22K11.1 Caenorhabditis elegans
WBGene00000219 asp-6 F21F8.7 Caenorhabditis elegans
WBGene00000252 bli-2 F59E12.12 Caenorhabditis elegans
WBGene00000256 bli-6 Y73B6BL.34 Caenorhabditis elegans
WBGene00000376 ccr-4 ZC518.3 Caenorhabditis elegans
WBGene00000475 cey-4 Y39A1C.3 Caenorhabditis elegans
WBGene00000477 cft-1 C18C4.2 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00000602 col-13 F15H10.2 Caenorhabditis elegans
WBGene00000606 col-17 F11G11.10 Caenorhabditis elegans
WBGene00000626 col-49 K09H9.3 Caenorhabditis elegans
WBGene00000634 col-58 F26B1.4 Caenorhabditis elegans
WBGene00000636 col-60 F22D6.10 Caenorhabditis elegans
WBGene00000639 col-63 ZK265.2 Caenorhabditis elegans
WBGene00000647 col-71 Y49F6B.10 Caenorhabditis elegans
WBGene00000648 col-72 W09G10.1 Caenorhabditis elegans
WBGene00000649 col-73 F11G11.12 Caenorhabditis elegans
WBGene00000650 col-74 ZK1248.2 Caenorhabditis elegans
WBGene00000653 col-77 M195.1 Caenorhabditis elegans
WBGene00000654 col-78 W07A12.5 Caenorhabditis elegans
WBGene00000661 col-86 Y81G3A.5 Caenorhabditis elegans
WBGene00000678 col-104 F58F6.1 Caenorhabditis elegans
WBGene00000681 col-107 C34H4.4 Caenorhabditis elegans
WBGene00000682 col-108 Y41D4A.2 Caenorhabditis elegans
WBGene00000705 col-131 C39E9.3 Caenorhabditis elegans
WBGene00000706 col-132 C39E9.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule