WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 47, F54E7.8-orc-5_6376, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F54E7.8-orc-5_6376

0 Anatomy Terms

238 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000145 apc-11 F35G12.9 Caenorhabditis elegans
WBGene00000236 bag-1 F57B10.11 Caenorhabditis elegans
WBGene00000249 bir-1 T27F2.3 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000275 bub-1 R06C7.8 Caenorhabditis elegans
WBGene00000408 cdk-7 Y39G10AL.3 Caenorhabditis elegans
WBGene00000480 cgp-1 Y38C9A.2 Caenorhabditis elegans
WBGene00000506 cic-1 H14E04.5 Caenorhabditis elegans
WBGene00000764 coq-4 T03F1.2 Caenorhabditis elegans
WBGene00000813 csn-1 Y59A8A.1 Caenorhabditis elegans
WBGene00000815 csn-3 Y38C1AA.2 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00000880 cyn-4 F59E10.2 Caenorhabditis elegans
WBGene00000886 cyn-10 B0252.4 Caenorhabditis elegans
WBGene00000890 sig-7 F39H2.2 Caenorhabditis elegans
WBGene00001002 div-1 R01H10.1 Caenorhabditis elegans
WBGene00001049 dog-1 F33H2.1 Caenorhabditis elegans
WBGene00001358 evl-20 F22B5.1 Caenorhabditis elegans
WBGene00001372 exo-3 R09B3.1 Caenorhabditis elegans
WBGene00001482 fog-2 Y113G7B.5 Caenorhabditis elegans
WBGene00001485 fre-1 Y113G7A.8 Caenorhabditis elegans
WBGene00001688 gpr-1 F22B7.13 Caenorhabditis elegans
WBGene00001689 gpr-2 C38C10.4 Caenorhabditis elegans
WBGene00001830 hcp-2 T06E4.1 Caenorhabditis elegans
WBGene00001832 hcp-4 T03F1.9 Caenorhabditis elegans
WBGene00001833 hcp-6 Y110A7A.1 Caenorhabditis elegans
WBGene00001985 hop-1 C18E3.8 Caenorhabditis elegans
WBGene00001998 hpr-17 F32A11.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule