WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. Description  Transcripts that showed significantly increased expression in ikb-1(nr2027) animals at L4 larva stage, comparing to in N2 animals.
Primary Identifier  WBPaper00060445:ikb-1(nr2027)_upregulated_L4
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0 Anatomy Terms

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000101 aka-1 D1022.7 Caenorhabditis elegans
WBGene00000143 apc-2 K06H7.6 Caenorhabditis elegans
WBGene00000156 apr-1 K04G2.8 Caenorhabditis elegans
WBGene00000168 apx-1 K08D9.3 Caenorhabditis elegans
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
WBGene00000250 bir-2 C50B8.2 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000271 brf-1 F45E12.2 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000386 cdc-25.1 K06A5.7 Caenorhabditis elegans
WBGene00000388 cdc-25.3 ZK637.11 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000417 ced-3 C48D1.2 Caenorhabditis elegans
WBGene00000419 ced-5 C02F4.1 Caenorhabditis elegans
WBGene00000460 ceh-39 T26C11.7 Caenorhabditis elegans
WBGene00000461 ceh-40 F17A2.5 Caenorhabditis elegans
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000467 cep-1 F52B5.5 Caenorhabditis elegans
WBGene00000473 cey-2 F46F11.2 Caenorhabditis elegans
WBGene00000474 cey-3 M01E11.5 Caenorhabditis elegans
WBGene00000479 cgh-1 C07H6.5 Caenorhabditis elegans
WBGene00000496 chs-1 T25G3.2 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00000537 clk-2 C07H6.6 Caenorhabditis elegans
WBGene00000546 clp-6 Y77E11A.10 Caenorhabditis elegans
WBGene00000592 coh-3 F08H9.1 Caenorhabditis elegans
WBGene00000597 col-8 F11H8.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002069 ikb-1 C04F12.3 Caenorhabditis elegans

0 Regulated By Molecule