WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 100-cell stage embryo of chd-3(eh4) animals, comparing to in N2 animals, both fed with gfp control RNAi vector.
Primary Identifier  WBPaper00050163:chd-3(eh4)_upregulated_100-cell-embryo

0 Anatomy Terms

84 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000491 che-12 B0024.8 Caenorhabditis elegans
WBGene00000903 daf-7 B0412.2 Caenorhabditis elegans
WBGene00001174 egl-5 C08C3.1 Caenorhabditis elegans
WBGene00001374 exp-2 F12F3.1 Caenorhabditis elegans
WBGene00001440 fkh-8 F40H3.4 Caenorhabditis elegans
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
WBGene00001624 glt-6 R05G6.6 Caenorhabditis elegans
WBGene00001887 his-13 ZK131.7 Caenorhabditis elegans
WBGene00001989 hot-4 T12A2.16 Caenorhabditis elegans
WBGene00002051 ifa-3 F52E10.5 Caenorhabditis elegans
WBGene00002987 lim-4 ZC64.4 Caenorhabditis elegans
WBGene00002988 lim-6 K03E6.1 Caenorhabditis elegans
WBGene00003546 nas-28 F42A10.8 Caenorhabditis elegans
WBGene00003937 pax-1 K07C11.1 Caenorhabditis elegans
WBGene00004216 ptr-1 C24B5.3 Caenorhabditis elegans
WBGene00004393 rnt-1 B0414.2 Caenorhabditis elegans
WBGene00004764 sel-7 K04G11.2 Caenorhabditis elegans
WBGene00006765 unc-29 T08G11.5 Caenorhabditis elegans
WBGene00007044 cpna-5 B0495.10 Caenorhabditis elegans
WBGene00007490 mks-5 C09G5.8 Caenorhabditis elegans
WBGene00007799 nrx-1 C29A12.4 Caenorhabditis elegans
WBGene00008044 C40H1.9 C40H1.9 Caenorhabditis elegans
WBGene00008785 F14B6.4 F14B6.4 Caenorhabditis elegans
WBGene00008967 F20B10.3 F20B10.3 Caenorhabditis elegans
WBGene00008978 cutl-3 F20D1.8 Caenorhabditis elegans
WBGene00011075 R07A4.4 R07A4.4 Caenorhabditis elegans
WBGene00011168 R09D1.12 R09D1.12 Caenorhabditis elegans
WBGene00011530 T06D8.10 T06D8.10 Caenorhabditis elegans
WBGene00011838 T19C4.1 T19C4.1 Caenorhabditis elegans
WBGene00013124 Y52B11A.4 Y52B11A.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 155-165 min after first cleavage at 20 Centigrade. Contains 96 cells. 96-cell embryo Ce WBls:0000090

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000482 chd-3 T14G8.1 Caenorhabditis elegans

0 Regulated By Molecule