WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 14, F28H1.5-T05D4.5, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:F28H1.5-T05D4.5

0 Anatomy Terms

69 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007230 C01G10.1 C01G10.1 Caenorhabditis elegans
WBGene00007401 C07A9.5 C07A9.5 Caenorhabditis elegans
WBGene00007570 C14A6.6 C14A6.6 Caenorhabditis elegans
WBGene00007571 C14A6.7 C14A6.7 Caenorhabditis elegans
WBGene00007572 C14A6.8 C14A6.8 Caenorhabditis elegans
WBGene00008662 F10G8.2 F10G8.2 Caenorhabditis elegans
WBGene00009413 oac-19 F35E2.6 Caenorhabditis elegans
WBGene00009550 F38H4.6 F38H4.6 Caenorhabditis elegans
WBGene00011478 T05D4.5 T05D4.5 Caenorhabditis elegans
WBGene00011533 T06E4.5 T06E4.5 Caenorhabditis elegans
WBGene00012249 W04E12.4 W04E12.4 Caenorhabditis elegans
WBGene00013068 Y51A2B.4 Y51A2B.4 Caenorhabditis elegans
WBGene00013586 Y80D3A.8 Y80D3A.8 Caenorhabditis elegans
WBGene00015192 B0432.11 B0432.11 Caenorhabditis elegans
WBGene00015685 C10G11.1 C10G11.1 Caenorhabditis elegans
WBGene00016177 C28C12.1 C28C12.1 Caenorhabditis elegans
WBGene00016320 C32E8.1 C32E8.1 Caenorhabditis elegans
WBGene00016963 C56C10.6 C56C10.6 Caenorhabditis elegans
WBGene00017545 F18A1.1 F18A1.1 Caenorhabditis elegans
WBGene00018930 F56B3.6 F56B3.6 Caenorhabditis elegans
WBGene00018949 acbp-4 F56C9.5 Caenorhabditis elegans
WBGene00019084 F59A6.2 F59A6.2 Caenorhabditis elegans
WBGene00019783 M70.1 M70.1 Caenorhabditis elegans
WBGene00020177 T02H6.7 T02H6.7 Caenorhabditis elegans
WBGene00020370 T08H10.3 T08H10.3 Caenorhabditis elegans
WBGene00020533 T16A1.2 T16A1.2 Caenorhabditis elegans
WBGene00020898 lido-16 T28D9.9 Caenorhabditis elegans
WBGene00020904 T28F12.1 T28F12.1 Caenorhabditis elegans
WBGene00021016 W03G9.5 W03G9.5 Caenorhabditis elegans
WBGene00021215 Y18H1A.11 Y18H1A.11 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule